Detailed information NTG0788358

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PUB92_RS18990
• Genome accession: NZ_CP117919
• Coordinates: 4191642..4192883 (+)
• Length: 413 a.a.
• NCBI ID: WP_274181720.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain PSKL.DM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4186642..4197883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUB92_RS18965 (PUB92_18965)	ampD	4187032..4187604 (-)	573	WP_019840656.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PUB92_RS18970 (PUB92_18970)	-	4187728..4188198 (+)	471	WP_017779055.1	retropepsin-like aspartic protease family protein	-
PUB92_RS18975 (PUB92_18975)	nadC	4188203..4189060 (+)	858	WP_274181719.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PUB92_RS18980 (PUB92_18980)	-	4189382..4189816 (+)	435	WP_041203005.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PUB92_RS18985 (PUB92_18985)	pilB	4189820..4191526 (+)	1707	WP_017766420.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PUB92_RS18990 (PUB92_18990)	pilC	4191642..4192883 (+)	1242	WP_274181720.1	type II secretion system F family protein	Machinery gene
PUB92_RS18995 (PUB92_18995)	pilD	4192906..4193778 (+)	873	WP_042007258.1	prepilin peptidase	Machinery gene
PUB92_RS19000 (PUB92_19000)	coaE	4193798..4194412 (+)	615	WP_242762039.1	dephospho-CoA kinase	-
PUB92_RS19005 (PUB92_19005)	zapD	4194450..4195172 (+)	723	WP_025202564.1	cell division protein ZapD	-
PUB92_RS19010 (PUB92_19010)	yacG	4195182..4195376 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PUB92_RS19015 (PUB92_19015)	mutT	4195437..4195850 (-)	414	WP_274181721.1	8-oxo-dGTP diphosphatase MutT	-
PUB92_RS19020 (PUB92_19020)	-	4195859..4197037 (-)	1179	WP_274181722.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45468.58 Da
• Isoelectric Point: 9.8834

>NTDB_id=788358 PUB92_RS18990 WP_274181720.1 4191642..4192883(+) (pilC) [Aeromonas dhakensis strain PSKL.DM]
MATLTQKQNAPKKVFAFRWSGVNRKGQRVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=788358 PUB92_RS18990 WP_274181720.1 4191642..4192883(+) (pilC) [Aeromonas dhakensis strain PSKL.DM]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAGGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATAAAGCCGATGGATATTGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAAAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAAACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTCACCTCCATTCTGCTGCTCTTCGTCATTCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCTGGTGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCTGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.323	95.884	0.55
pilC	Acinetobacter baumannii D1279779	54	96.852	0.523
pilC	Legionella pneumophila strain ERS1305867	51.358	98.063	0.504
pilC	Acinetobacter baylyi ADP1	52.141	96.126	0.501
pilC	Vibrio cholerae strain A1552	47.739	96.368	0.46
pilC	Vibrio campbellii strain DS40M4	47.103	96.126	0.453
pilG	Neisseria meningitidis 44/76-A	41.085	93.705	0.385
pilG	Neisseria gonorrhoeae MS11	41.085	93.705	0.385
pilC	Thermus thermophilus HB27	38	96.852	0.368