Detailed information NTG0788359

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUB92_RS18995
• Genome accession: NZ_CP117919
• Coordinates: 4192906..4193778 (+)
• Length: 290 a.a.
• NCBI ID: WP_042007258.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain PSKL.DM
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4187906..4198778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUB92_RS18975 (PUB92_18975)	nadC	4188203..4189060 (+)	858	WP_274181719.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PUB92_RS18980 (PUB92_18980)	-	4189382..4189816 (+)	435	WP_041203005.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PUB92_RS18985 (PUB92_18985)	pilB	4189820..4191526 (+)	1707	WP_017766420.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PUB92_RS18990 (PUB92_18990)	pilC	4191642..4192883 (+)	1242	WP_274181720.1	type II secretion system F family protein	Machinery gene
PUB92_RS18995 (PUB92_18995)	pilD	4192906..4193778 (+)	873	WP_042007258.1	prepilin peptidase	Machinery gene
PUB92_RS19000 (PUB92_19000)	coaE	4193798..4194412 (+)	615	WP_242762039.1	dephospho-CoA kinase	-
PUB92_RS19005 (PUB92_19005)	zapD	4194450..4195172 (+)	723	WP_025202564.1	cell division protein ZapD	-
PUB92_RS19010 (PUB92_19010)	yacG	4195182..4195376 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PUB92_RS19015 (PUB92_19015)	mutT	4195437..4195850 (-)	414	WP_274181721.1	8-oxo-dGTP diphosphatase MutT	-
PUB92_RS19020 (PUB92_19020)	-	4195859..4197037 (-)	1179	WP_274181722.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32562.93 Da
• Isoelectric Point: 7.0271

>NTDB_id=788359 PUB92_RS18995 WP_042007258.1 4192906..4193778(+) (pilD) [Aeromonas dhakensis strain PSKL.DM]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWRAEYLSYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=788359 PUB92_RS18995 WP_042007258.1 4192906..4193778(+) (pilD) [Aeromonas dhakensis strain PSKL.DM]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCGGGCCGAATACCTCAGCTATTTCA
ATCCAGAGACACAACCGCAGCAGGAGGAACGCTACAACCTGATGGTGCCACGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGTTGGCTCTGGCTCAAGGGGCGTTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGTTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCAGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCCTCCCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGCCCTTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.238	98.621	0.614
pilD	Vibrio campbellii strain DS40M4	56.993	98.621	0.562
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462