Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PUB83_RS21210 Genome accession   NZ_CP117918
Coordinates   4649584..4650825 (-) Length   413 a.a.
NCBI ID   WP_017409439.1    Uniprot ID   A0AAX0XY15
Organism   Aeromonas hydrophila subsp. hydrophila strain PSKL.DP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4644584..4655825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUB83_RS21180 (PUB83_18650) - 4645424..4646608 (+) 1185 WP_274277524.1 tetratricopeptide repeat protein -
  PUB83_RS21185 (PUB83_18655) mutT 4646617..4647030 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  PUB83_RS21190 (PUB83_18660) yacG 4647091..4647285 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  PUB83_RS21195 (PUB83_18665) zapD 4647295..4648017 (-) 723 WP_274277525.1 cell division protein ZapD -
  PUB83_RS21200 (PUB83_18670) coaE 4648055..4648669 (-) 615 WP_274277526.1 dephospho-CoA kinase -
  PUB83_RS21205 (PUB83_18675) pilD 4648689..4649561 (-) 873 WP_274277527.1 A24 family peptidase Machinery gene
  PUB83_RS21210 (PUB83_18680) pilC 4649584..4650825 (-) 1242 WP_017409439.1 type II secretion system F family protein Machinery gene
  PUB83_RS21215 (PUB83_18685) pilB 4650941..4652656 (-) 1716 WP_259231738.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  PUB83_RS21220 (PUB83_18690) - 4652647..4653087 (-) 441 WP_226032467.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PUB83_RS21225 (PUB83_18695) nadC 4653410..4654267 (-) 858 WP_274277528.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PUB83_RS21230 (PUB83_18700) - 4654273..4654743 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  PUB83_RS21235 (PUB83_18705) ampD 4654891..4655463 (+) 573 WP_274277529.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45408.55 Da        Isoelectric Point: 9.8637

>NTDB_id=788334 PUB83_RS21210 WP_017409439.1 4649584..4650825(-) (pilC) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=788334 PUB83_RS21210 WP_017409439.1 4649584..4650825(-) (pilC) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACGACTATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAAATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAGGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTTTACCCCACCATGGTTATACTGGT
GGCTATTGTCGTTACTTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTTGGTGCCGAGC
TGCCTATCTTCACCCAGTTCGTCATCGGTATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCGTACTGACAAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACGACCTTCTCTGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCTGGCAACTATGTCTATCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTTGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366