Detailed information NTG0788333

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUB83_RS21205
• Genome accession: NZ_CP117918
• Coordinates: 4648689..4649561 (-)
• Length: 290 a.a.
• NCBI ID: WP_274277527.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila subsp. hydrophila strain PSKL.DP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4643689..4654561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUB83_RS21180 (PUB83_18650)	-	4645424..4646608 (+)	1185	WP_274277524.1	tetratricopeptide repeat protein	-
PUB83_RS21185 (PUB83_18655)	mutT	4646617..4647030 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
PUB83_RS21190 (PUB83_18660)	yacG	4647091..4647285 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PUB83_RS21195 (PUB83_18665)	zapD	4647295..4648017 (-)	723	WP_274277525.1	cell division protein ZapD	-
PUB83_RS21200 (PUB83_18670)	coaE	4648055..4648669 (-)	615	WP_274277526.1	dephospho-CoA kinase	-
PUB83_RS21205 (PUB83_18675)	pilD	4648689..4649561 (-)	873	WP_274277527.1	A24 family peptidase	Machinery gene
PUB83_RS21210 (PUB83_18680)	pilC	4649584..4650825 (-)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
PUB83_RS21215 (PUB83_18685)	pilB	4650941..4652656 (-)	1716	WP_259231738.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PUB83_RS21220 (PUB83_18690)	-	4652647..4653087 (-)	441	WP_226032467.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PUB83_RS21225 (PUB83_18695)	nadC	4653410..4654267 (-)	858	WP_274277528.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32538.86 Da
• Isoelectric Point: 6.7410

>NTDB_id=788333 PUB83_RS21205 WP_274277527.1 4648689..4649561(-) (pilD) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQTEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=788333 PUB83_RS21205 WP_274277527.1 4648689..4649561(-) (pilD) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGACCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAACAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACGGCCCTGCTCTCGCTAGTCGTCGCCGCAACATTCCCACCGGGTTGGGGCT
TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAAATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAACCTGGCAGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	56.294	98.621	0.555
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462