Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   PT256_RS09775 Genome accession   NZ_CP117817
Coordinates   2141357..2141671 (-) Length   104 a.a.
NCBI ID   WP_061638309.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136357..2146671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS09750 (PT256_09750) - 2136782..2137282 (-) 501 WP_011214243.1 hypothetical protein -
  PT256_RS09755 (PT256_09755) - 2137774..2138634 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  PT256_RS09760 (PT256_09760) - 2138752..2139948 (-) 1197 WP_011214245.1 murein transglycosylase A -
  PT256_RS09765 (PT256_09765) lpp1976 2140058..2140615 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  PT256_RS09770 (PT256_09770) lpp1977 2140612..2141418 (-) 807 WP_061638310.1 hypothetical protein Machinery gene
  PT256_RS09775 (PT256_09775) lpp1978 2141357..2141671 (-) 315 WP_061638309.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PT256_RS09780 (PT256_09780) hisC 2141831..2142940 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  PT256_RS09785 (PT256_09785) - 2142977..2143318 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  PT256_RS09790 (PT256_09790) secF 2143496..2144413 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  PT256_RS09795 (PT256_09795) secD 2144426..2146282 (-) 1857 WP_061638307.1 protein translocase subunit SecD -
  PT256_RS09800 (PT256_09800) yajC 2146304..2146639 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=787702 PT256_RS09775 WP_061638309.1 2141357..2141671(-) (lpp1978) [Legionella pneumophila strain D5573]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=787702 PT256_RS09775 WP_061638309.1 2141357..2141671(-) (lpp1978) [Legionella pneumophila strain D5573]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971