Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PGW99_RS10345 Genome accession   NZ_CP117520
Coordinates   2156656..2158791 (-) Length   711 a.a.
NCBI ID   WP_273779497.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2151656..2163791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10330 - 2154142..2154957 (-) 816 WP_273777601.1 hypothetical protein -
  PGW99_RS10335 aroB 2154967..2156052 (-) 1086 WP_273777602.1 3-dehydroquinate synthase -
  PGW99_RS10340 aroK 2156077..2156619 (-) 543 WP_273777603.1 shikimate kinase AroK -
  PGW99_RS10345 pilQ 2156656..2158791 (-) 2136 WP_273779497.1 type IV pilus secretin PilQ family protein Machinery gene
  PGW99_RS10350 pilP 2158850..2159374 (-) 525 WP_273779498.1 pilus assembly protein PilP Machinery gene
  PGW99_RS10355 pilO 2159374..2160105 (-) 732 WP_273777604.1 type 4a pilus biogenesis protein PilO Machinery gene
  PGW99_RS10360 pilN 2160102..2160740 (-) 639 WP_273777605.1 PilN domain-containing protein Machinery gene
  PGW99_RS10365 comM 2160740..2161801 (-) 1062 WP_273777606.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77154.86 Da        Isoelectric Point: 6.5705

>NTDB_id=786236 PGW99_RS10345 WP_273779497.1 2156656..2158791(-) (pilQ) [Acinetobacter sp. GSS19]
MNPLCRQFSLGVVAAAVMQAASAQVSITNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAQQSLNQSTI
PVATQEASSVEVASDAQRSRLIVNLKEAGTFTTRVEGNTFILKINNLTQQPTLPTLAPAAKKAAQGIANIGFQRGSQGEG
QVVIDLLGSNTPADVQQQGSKIVVRMLGNKIPAHLARRLNVNDFATPVATVDAYNDGGNGVITIQSNGSYEYMAYQAENK
LTISLKRPEEKNTVKARNSNLYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKT
RSLDKRRNGNVIWIAPVTEMIKAEEDEAKAVEQSMKLAPIQTEYIRLSYAKAADVLKLIEETRNAKGAILNRTTSTDSLA
LESLLSPRGSAVADTRTNTLIINDTAKNIDKVRKMIDLLDVAVKQVMVEARIVRATTDFTKEMGVKWGVLSQGINENNDL
LVGGSDTTLWNLRTPTVNTTTGQSKYTIERPQNLNVDLGATNPAGRIAFGLISMSDFMLDLELSALQADGYGEVISTPKV
LTADKQVAKVASGQQIPYQTTTNSASGSTANTQFKEALLSLEVTPSITPDGKVQMELVITSDSPGGVAPNGEIILNKNEI
NTNVLVNNGETVVLGGIFEQENVNKQTKVPFFGDLPGIGRLFRKDSKTDNKRELLIFVTPRIVNDSVTGNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=786236 PGW99_RS10345 WP_273779497.1 2156656..2158791(-) (pilQ) [Acinetobacter sp. GSS19]
ATGAACCCTTTATGTCGTCAATTCTCTCTCGGTGTTGTTGCTGCGGCTGTGATGCAAGCCGCCAGTGCACAGGTGAGTAT
CACTAATGTGGTTCCAATGCAGATTCCTGGGCAGGGCACAGAAATTCGTGTGATGTTTAATGGCTTGCCGCCACAGCCGC
AAGCGTATCAGTTAGAACAACCTTCACGTCTCATTCTGGATTTTGACAAGGCTCAACAATCTTTAAATCAATCGACTATT
CCTGTAGCAACGCAAGAAGCCAGCTCTGTTGAGGTCGCTTCTGATGCGCAGCGTTCACGTTTGATTGTTAATTTAAAAGA
GGCGGGTACCTTTACCACACGCGTAGAAGGTAATACCTTTATTCTAAAAATTAATAATCTTACACAACAGCCAACACTAC
CTACGTTGGCTCCAGCCGCAAAGAAAGCTGCACAAGGGATTGCAAATATTGGCTTTCAACGTGGTAGCCAAGGTGAGGGT
CAAGTTGTGATTGACCTGCTAGGATCAAATACACCAGCAGATGTACAGCAGCAAGGTAGCAAGATTGTTGTGCGGATGCT
GGGAAATAAAATTCCAGCACATCTAGCCCGTCGTTTAAATGTGAATGACTTTGCAACCCCTGTTGCAACTGTAGATGCTT
ATAATGATGGTGGTAATGGTGTGATTACTATTCAGTCGAATGGTAGTTATGAATATATGGCCTATCAGGCTGAAAATAAG
CTAACAATTAGCCTTAAACGTCCGGAAGAAAAGAACACAGTAAAAGCACGTAACAGCAATCTCTATACCGGCAAAAAGAT
TTCTCTGGACTTCCAAGATATTGAAGTACGTCGTGTATTGCAGTTGTTGGCAGACTTTACGGGCATCAATATGGTGGCTG
CAGATAGCGTACAAGGTAATATTACCCTGCGTTTGAAAGATGTGCCTTGGGATCAGGCACTTGATATTATTCTAAAAACT
AGAAGTTTAGATAAACGCCGTAATGGTAATGTGATCTGGATTGCTCCTGTTACAGAAATGATTAAGGCTGAAGAAGATGA
GGCTAAAGCTGTTGAACAGAGTATGAAGCTCGCTCCAATACAAACGGAATATATTCGTCTGAGTTACGCAAAAGCTGCCG
ATGTATTGAAGTTGATTGAAGAAACGCGTAATGCTAAAGGTGCCATTTTAAATAGAACAACTAGTACAGATTCTTTAGCT
CTGGAGAGTTTATTAAGCCCACGTGGTAGTGCGGTGGCAGATACACGAACTAATACTCTGATTATTAATGATACGGCAAA
AAATATTGATAAAGTCCGTAAAATGATTGATCTGCTTGATGTGGCTGTGAAACAAGTCATGGTAGAGGCGAGAATTGTCC
GTGCAACAACTGATTTCACTAAGGAAATGGGGGTGAAGTGGGGTGTATTATCTCAGGGAATTAACGAAAATAATGACTTA
CTCGTTGGTGGTAGTGATACAACTTTATGGAATTTGCGTACACCAACAGTGAATACAACCACAGGTCAATCCAAATATAC
GATCGAAAGACCTCAAAATTTAAATGTGGATTTGGGCGCAACAAACCCGGCTGGTCGAATTGCTTTCGGTTTAATTAGTA
TGTCAGATTTTATGTTGGATTTAGAATTATCTGCTTTGCAGGCTGATGGTTATGGTGAAGTGATTTCTACGCCTAAAGTC
CTGACAGCAGATAAACAAGTTGCTAAAGTTGCTTCTGGTCAACAAATTCCTTATCAAACGACGACTAATTCTGCCTCTGG
TTCCACTGCGAATACTCAATTTAAAGAGGCTTTATTAAGTCTGGAGGTGACACCGAGTATCACTCCTGATGGTAAAGTGC
AAATGGAATTAGTTATTACGAGTGATAGTCCTGGGGGAGTGGCTCCGAATGGCGAGATTATTTTGAATAAAAATGAAATC
AATACTAATGTTCTTGTTAATAATGGGGAAACTGTTGTTCTGGGCGGAATTTTTGAACAAGAAAATGTTAATAAGCAGAC
GAAAGTTCCTTTCTTTGGTGATCTACCTGGAATAGGGCGCTTATTCCGTAAAGATAGTAAGACCGATAATAAGCGTGAAT
TACTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-122)

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Bacterial type II/III secretion system short domain (Secretin_N)

(363-445)

Secretin and TonB N terminus short domain (STN)

(294-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.138

100

0.765
  pilQ Acinetobacter baumannii strain A118

75

100

0.764
  comQ Acinetobacter baylyi ADP1

72.765

100

0.733
  pilQ Pseudomonas aeruginosa PAK

41.261

98.172

0.405
  pilQ Legionella pneumophila strain Lp02

38.418

99.578

0.383
  pilQ Legionella pneumophila strain ERS1305867

38.231

98.594

0.377