Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PGW99_RS10365 Genome accession   NZ_CP117520
Coordinates   2160740..2161801 (-) Length   353 a.a.
NCBI ID   WP_273777606.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155740..2166801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10340 aroK 2156077..2156619 (-) 543 WP_273777603.1 shikimate kinase AroK -
  PGW99_RS10345 pilQ 2156656..2158791 (-) 2136 WP_273779497.1 type IV pilus secretin PilQ family protein Machinery gene
  PGW99_RS10350 pilP 2158850..2159374 (-) 525 WP_273779498.1 pilus assembly protein PilP Machinery gene
  PGW99_RS10355 pilO 2159374..2160105 (-) 732 WP_273777604.1 type 4a pilus biogenesis protein PilO Machinery gene
  PGW99_RS10360 pilN 2160102..2160740 (-) 639 WP_273777605.1 PilN domain-containing protein Machinery gene
  PGW99_RS10365 comM 2160740..2161801 (-) 1062 WP_273777606.1 pilus assembly protein PilM Machinery gene
  PGW99_RS10370 ponA 2161963..2164488 (+) 2526 WP_273777607.1 penicillin-binding protein PBP1a -
  PGW99_RS10375 - 2164504..2165316 (-) 813 WP_273777608.1 methyltransferase domain-containing protein -
  PGW99_RS10380 mraY 2165375..2166493 (-) 1119 WP_273777609.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 39000.66 Da        Isoelectric Point: 4.5836

>NTDB_id=786240 PGW99_RS10365 WP_273777606.1 2160740..2161801(-) (comM) [Acinetobacter sp. GSS19]
MLNRLYRKPNKGLVGVDVSSTSVKLLELSVKNGRYIVESYALVPLPEGSVVEKNIMNPEAVGDALERVINLANPHATNAA
IAVPTSMVINKVIEMDADMSDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVHVLLVATRTENVDARVEVLD
LAGLTPKIVDVESYAMERAFSVFADTLPMGANTVGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTQDVQNRYGLSFE
EAGRAKKQRTLPDDFETEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLPKLLQQKLGYRVTTANPF
LQMGFSPQIDIKKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=786240 PGW99_RS10365 WP_273777606.1 2160740..2161801(-) (comM) [Acinetobacter sp. GSS19]
GTGCTCAACAGGTTATATCGTAAACCAAATAAGGGGTTAGTAGGAGTAGATGTTAGTTCTACTTCTGTTAAGTTATTAGA
GCTCTCTGTAAAGAACGGTAGATATATTGTCGAAAGCTATGCGCTTGTTCCTCTACCTGAAGGCAGTGTGGTCGAAAAAA
ACATCATGAATCCGGAAGCGGTTGGTGATGCATTAGAACGCGTGATTAATCTTGCGAATCCTCATGCAACTAATGCAGCA
ATTGCTGTGCCGACGTCCATGGTCATCAACAAGGTGATCGAAATGGATGCGGATATGAGCGATGATGAGCGTGAAGTTCA
GATCCGGATGGATGCAGAACAATATATTCCTTTCCCGCTTGATGAAGTCAGTCTCGATTTTGAAGTCTTACCTGACCGTC
TGGCAAATCCGAATCGAGTTCATGTGTTGCTTGTCGCTACCCGTACTGAAAACGTCGATGCACGTGTTGAAGTTCTAGAT
TTAGCCGGTTTGACTCCAAAAATCGTTGATGTTGAAAGCTACGCGATGGAGCGTGCCTTTAGTGTATTTGCGGATACGCT
ACCGATGGGTGCGAATACCGTGGGTATCTTGGATATCGGTCATACCATGACCACACTTTCGGTGATGCAGAACGGTAAAA
TCATTTATACTCGTGAGCAGGTTTTTGGTGGTAAGCAGTTAACCCAAGATGTGCAAAACCGCTATGGTTTGTCTTTTGAA
GAAGCAGGACGTGCCAAGAAGCAGCGTACCTTGCCTGATGATTTTGAAACCGAAGTGCTTGAGCCATTTTTAGAAGCAGT
GGTACAACAAGCTGCACGCTCATTACAGTTCTTTTTCTCCTCTTCGCAGTTTAATGAAATCGACCATATTTTATTGGCAG
GCGGGAATGCCAATATTCCGGGTTTGCCAAAATTATTACAACAAAAATTGGGTTATCGGGTGACAACCGCCAATCCATTT
CTGCAAATGGGTTTTTCACCCCAAATTGATATTAAGAAAATCGAAAATGATGCTTCCTCCCTCATGGTGGCATGTGGTCT
CGCATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

87.143

99.15

0.864
  pilM Acinetobacter baumannii D1279779

86.857

99.15

0.861
  comM Acinetobacter baylyi ADP1

83.714

99.15

0.83
  pilM Legionella pneumophila strain ERS1305867

40.909

99.717

0.408