Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PGW99_RS10350 Genome accession   NZ_CP117520
Coordinates   2158850..2159374 (-) Length   174 a.a.
NCBI ID   WP_273779498.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2153850..2164374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10330 - 2154142..2154957 (-) 816 WP_273777601.1 hypothetical protein -
  PGW99_RS10335 aroB 2154967..2156052 (-) 1086 WP_273777602.1 3-dehydroquinate synthase -
  PGW99_RS10340 aroK 2156077..2156619 (-) 543 WP_273777603.1 shikimate kinase AroK -
  PGW99_RS10345 pilQ 2156656..2158791 (-) 2136 WP_273779497.1 type IV pilus secretin PilQ family protein Machinery gene
  PGW99_RS10350 pilP 2158850..2159374 (-) 525 WP_273779498.1 pilus assembly protein PilP Machinery gene
  PGW99_RS10355 pilO 2159374..2160105 (-) 732 WP_273777604.1 type 4a pilus biogenesis protein PilO Machinery gene
  PGW99_RS10360 pilN 2160102..2160740 (-) 639 WP_273777605.1 PilN domain-containing protein Machinery gene
  PGW99_RS10365 comM 2160740..2161801 (-) 1062 WP_273777606.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19156.44 Da        Isoelectric Point: 7.9849

>NTDB_id=786237 PGW99_RS10350 WP_273779498.1 2158850..2159374(-) (pilP) [Acinetobacter sp. GSS19]
MKIKLSAMFMLGIVLVGCDSRIDAVNEQMAVIRNQPPLAIDPAPVFTPVPTFDYAAQQLRSPFLPTSLATELRIMAGKRV
YPNLSRPQQPLESYAIETLNMKGSMRGQNGQIMALIQTPDGEIERVQVGSYMGMNHGRIIKIGPTQIDLIEIIPDGRDGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=786237 PGW99_RS10350 WP_273779498.1 2158850..2159374(-) (pilP) [Acinetobacter sp. GSS19]
ATGAAGATAAAGCTCTCGGCAATGTTCATGCTAGGAATTGTCCTGGTGGGATGTGATTCAAGAATTGATGCGGTTAATGA
GCAAATGGCAGTCATCCGTAATCAGCCTCCATTGGCGATTGACCCCGCTCCAGTTTTTACACCTGTTCCGACATTTGATT
ACGCCGCTCAACAGTTAAGAAGTCCATTTTTGCCTACTTCTCTGGCAACCGAACTACGAATCATGGCTGGTAAGCGAGTT
TATCCGAACCTCTCTCGCCCACAACAGCCATTAGAAAGCTATGCCATTGAAACCTTGAATATGAAAGGCAGTATGCGTGG
TCAAAATGGTCAGATCATGGCACTGATACAAACACCTGATGGTGAGATTGAGCGTGTCCAGGTGGGAAGCTATATGGGCA
TGAACCATGGCCGTATTATCAAGATTGGTCCAACGCAAATTGATCTGATTGAGATCATTCCCGATGGGCGTGATGGCTAT
GTCGAACGTCCAAGAAGTCTCGTGTTGATTGGCCCAGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

75.429

100

0.759
  comL Acinetobacter baylyi ADP1

72.674

98.851

0.718