Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PGW99_RS10355 Genome accession   NZ_CP117520
Coordinates   2159374..2160105 (-) Length   243 a.a.
NCBI ID   WP_273777604.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154374..2165105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10335 aroB 2154967..2156052 (-) 1086 WP_273777602.1 3-dehydroquinate synthase -
  PGW99_RS10340 aroK 2156077..2156619 (-) 543 WP_273777603.1 shikimate kinase AroK -
  PGW99_RS10345 pilQ 2156656..2158791 (-) 2136 WP_273779497.1 type IV pilus secretin PilQ family protein Machinery gene
  PGW99_RS10350 pilP 2158850..2159374 (-) 525 WP_273779498.1 pilus assembly protein PilP Machinery gene
  PGW99_RS10355 pilO 2159374..2160105 (-) 732 WP_273777604.1 type 4a pilus biogenesis protein PilO Machinery gene
  PGW99_RS10360 pilN 2160102..2160740 (-) 639 WP_273777605.1 PilN domain-containing protein Machinery gene
  PGW99_RS10365 comM 2160740..2161801 (-) 1062 WP_273777606.1 pilus assembly protein PilM Machinery gene
  PGW99_RS10370 ponA 2161963..2164488 (+) 2526 WP_273777607.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27560.06 Da        Isoelectric Point: 4.7905

>NTDB_id=786238 PGW99_RS10355 WP_273777604.1 2159374..2160105(-) (pilO) [Acinetobacter sp. GSS19]
MSRDEFDQVEYEAAVPTKKKMTLDQFIKQFNTLDPNNYGSWPLSVKVTCWIFIFLVVGAVGYFLAIKPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNAGLKFKNIRLEEEIKQEFFIEQP
IDIQASGDYHSFGAFASGIAALPRIVTLHDFTIEAKPSADKKNADIPEVSYSVKAKTYRYISAEEQAKNQQQAQQNGQGG
QSK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=786238 PGW99_RS10355 WP_273777604.1 2159374..2160105(-) (pilO) [Acinetobacter sp. GSS19]
ATGAGCCGTGATGAATTTGACCAAGTAGAGTATGAAGCTGCTGTACCGACTAAAAAGAAAATGACGCTGGATCAATTTAT
TAAGCAGTTTAATACATTAGATCCTAACAATTACGGTAGTTGGCCTTTATCAGTCAAGGTGACTTGCTGGATTTTTATTT
TTCTCGTGGTGGGTGCTGTTGGTTATTTCTTGGCAATTAAGCCAAAGCTTGAAGCGATTAGTAATGCTCAAGCGCAAGAA
CAGAACTTGCTGAACGAGTTTCGCGAGAAAGACTCAAAATTAAGAAATCTACAGCAATACCAAGCACAACTGCAGGAAAT
GGAGGCGAACTTTAACCAGCAGTTAGAGCAATTGCCAAAAGAAACTGAAATTCCGGGTTTGGTGGAAGATATTAACGTGA
CTGGTGTGAATGCAGGTCTGAAATTTAAAAACATTCGCCTTGAAGAAGAAATCAAACAAGAGTTCTTTATTGAACAGCCG
ATTGATATTCAGGCCAGCGGTGATTATCACTCCTTTGGTGCCTTTGCGAGCGGCATTGCAGCCTTGCCACGTATTGTGAC
TTTGCATGATTTTACTATCGAAGCTAAACCGAGTGCAGATAAGAAAAATGCTGATATTCCTGAAGTAAGTTATTCAGTGA
AAGCAAAAACCTACCGTTATATCAGTGCAGAAGAGCAGGCGAAAAATCAACAACAAGCGCAGCAGAATGGTCAAGGAGGG
CAGTCAAAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

70.386

95.885

0.675
  comO Acinetobacter baylyi ADP1

71.366

93.416

0.667