Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PGW99_RS10360 Genome accession   NZ_CP117520
Coordinates   2160102..2160740 (-) Length   212 a.a.
NCBI ID   WP_273777605.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155102..2165740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS10340 aroK 2156077..2156619 (-) 543 WP_273777603.1 shikimate kinase AroK -
  PGW99_RS10345 pilQ 2156656..2158791 (-) 2136 WP_273779497.1 type IV pilus secretin PilQ family protein Machinery gene
  PGW99_RS10350 pilP 2158850..2159374 (-) 525 WP_273779498.1 pilus assembly protein PilP Machinery gene
  PGW99_RS10355 pilO 2159374..2160105 (-) 732 WP_273777604.1 type 4a pilus biogenesis protein PilO Machinery gene
  PGW99_RS10360 pilN 2160102..2160740 (-) 639 WP_273777605.1 PilN domain-containing protein Machinery gene
  PGW99_RS10365 comM 2160740..2161801 (-) 1062 WP_273777606.1 pilus assembly protein PilM Machinery gene
  PGW99_RS10370 ponA 2161963..2164488 (+) 2526 WP_273777607.1 penicillin-binding protein PBP1a -
  PGW99_RS10375 - 2164504..2165316 (-) 813 WP_273777608.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23692.15 Da        Isoelectric Point: 6.9927

>NTDB_id=786239 PGW99_RS10360 WP_273777605.1 2160102..2160740(-) (pilN) [Acinetobacter sp. GSS19]
MAKINLLPWRDELREQRKKQFIMICLAVVLLGATAVAGAWFYYDHKLADQEQANQLVMSTNQNLDVQLKSLQGLQERRNA
VIERMKLIQGLQSQRPIAVRLIDEIVRVTPANMYLTKFTRAGDKFTIEGKAESPNTVAELLRSLEASPWYRNAFMNSFLA
AEERKDKAPSSLVPRVEESYGSFVVTVDLGEIATTETAGTETQGASEVGAAK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=786239 PGW99_RS10360 WP_273777605.1 2160102..2160740(-) (pilN) [Acinetobacter sp. GSS19]
ATGGCAAAGATTAACTTGCTGCCTTGGCGTGATGAGCTCAGGGAACAACGAAAAAAACAATTTATTATGATCTGTTTGGC
TGTCGTGTTGTTGGGGGCGACAGCAGTAGCGGGGGCATGGTTTTATTATGATCACAAACTTGCCGATCAGGAACAGGCCA
ATCAGTTGGTGATGAGTACCAATCAAAATCTGGATGTGCAGTTAAAATCTCTGCAAGGTTTGCAAGAGCGCCGTAATGCA
GTGATTGAGCGCATGAAGCTGATCCAAGGGTTACAAAGTCAGCGTCCGATTGCAGTGCGTTTAATTGATGAAATTGTGCG
TGTAACACCTGCCAATATGTACCTGACGAAATTTACCCGTGCAGGCGATAAATTTACCATTGAAGGTAAGGCGGAAAGTC
CAAATACTGTGGCAGAACTTTTGCGTTCTTTAGAAGCCTCGCCGTGGTACCGCAATGCTTTTATGAACTCTTTCTTGGCT
GCTGAAGAACGAAAAGATAAGGCACCAAGTTCACTTGTGCCACGTGTGGAAGAAAGTTATGGCAGTTTTGTTGTAACCGT
TGACTTGGGTGAAATTGCAACAACAGAAACTGCAGGTACAGAAACACAAGGTGCTTCAGAAGTGGGAGCAGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.995

100

0.774
  comN Acinetobacter baylyi ADP1

71.292

98.585

0.703