Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PGW99_RS01275 Genome accession   NZ_CP117520
Coordinates   250576..251802 (-) Length   408 a.a.
NCBI ID   WP_273778279.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245576..256802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS01250 - 246990..247316 (+) 327 WP_273778274.1 pyrimidine/purine nucleoside phosphorylase -
  PGW99_RS01255 rlmB 247422..248168 (+) 747 WP_273778275.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PGW99_RS01260 - 248204..249115 (+) 912 WP_273778276.1 DMT family transporter -
  PGW99_RS01265 coaE 249109..249714 (-) 606 WP_273778277.1 dephospho-CoA kinase -
  PGW99_RS01270 pilD 249716..250576 (-) 861 WP_273778278.1 A24 family peptidase Machinery gene
  PGW99_RS01275 pilC 250576..251802 (-) 1227 WP_273778279.1 type II secretion system F family protein Machinery gene
  PGW99_RS01280 pilB 251835..253544 (-) 1710 WP_273778280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGW99_RS01285 tpiA 253833..254627 (+) 795 WP_273778281.1 triose-phosphate isomerase -
  PGW99_RS01290 secG 254640..254969 (+) 330 WP_273778283.1 preprotein translocase subunit SecG -
  PGW99_RS01310 rimP 255591..256115 (+) 525 WP_273778284.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.32 Da        Isoelectric Point: 9.9936

>NTDB_id=786211 PGW99_RS01275 WP_273778279.1 250576..251802(-) (pilC) [Acinetobacter sp. GSS19]
MAAKKAQMMPTFTYDGVDRKGLKIKGELPARNMALAKVTLRKQGITINNIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIIVTIILMVKVVPVFEGLFTSFGADLPAFTKMVVNMSQWMQKYWFLLIIGIGGAVA
AFIEAKKRSQKFRDMLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYERAVMKIREDVS
TGQQLQFAMRASNLFPPMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=786211 PGW99_RS01275 WP_273778279.1 250576..251802(-) (pilC) [Acinetobacter sp. GSS19]
ATGGCAGCGAAAAAAGCACAAATGATGCCGACTTTTACCTATGACGGGGTCGATCGCAAGGGGTTGAAAATCAAGGGAGA
GTTGCCTGCACGCAACATGGCACTCGCTAAAGTCACCCTGCGCAAACAAGGCATTACCATCAACAATATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGATTGATGAAGAAAAAAGTGTCTACGCTGGATATCACCGTATTTACTCGCCAGTTAGCCACC
ATGATGAAAGCCGGTGTTCCACTGGTACAAGGGTTTGAAATCGTTGCGGAAGGTCTAGAAAATCCAGCCATGCGTGAAGT
GGTTTTGGGGATCAAAGGGGAAGTAGAAGGCGGTAACACCTTTGCCGGTGCTTTACGCAAATATCCGCAATATTTTGACA
AACTGTTTTGTTCTCTAGTGGAATCAGGCGAACAATCAGGTGCACTTGAGACCATGCTAGATCGCGTCGCGATCTATAAA
GAAAAAAGTGAACTGCTCAAACAGAAAATCAAAAAAGCCATGAAATACCCGGCGACCGTTATCGTCGTGGCGATTATTGT
CACAATTATTTTGATGGTGAAAGTGGTACCGGTATTTGAAGGCCTATTCACCTCTTTTGGTGCCGATCTCCCGGCTTTTA
CCAAGATGGTCGTGAATATGTCGCAATGGATGCAGAAATACTGGTTCCTACTCATTATCGGAATTGGTGGTGCAGTGGCT
GCATTCATTGAAGCAAAAAAACGCAGTCAGAAATTTCGCGATATGCTTGACAAACTAGCTCTCAAGCTACCGATCTTTGG
TGATTTGGTATATAAAGCAATTATTGCCCGTTATAGCCGCACACTGGCTACCACGTTCGCTGCAGGTGTACCACTGATTG
ATGCTTTGGAATCAACTGCTGGTGCCACCAACAACGTGATTTATGAGCGTGCAGTAATGAAAATCCGTGAGGATGTTTCT
ACCGGGCAACAATTACAGTTCGCGATGCGTGCCAGCAACTTGTTCCCACCGATGGCCGTACAAATGGTCGCCATTGGTGA
AGAATCTGGTGCACTAGATGCCATGTTAGATAAAGTTGCCACACACTTTGAAAATGAAGTGGATAACGCTGTTGATGGCT
TAACTTCCATGATGGAACCGTTAATTATGGCCATCTTGGGTGTACTCGTTGGTGGTCTAGTGGTTGCCATGTACCTTCCG
ATCTTCCAGATGGGTTCTGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.951

100

0.9
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.51

0.6
  pilC Legionella pneumophila strain ERS1305867

54.321

99.265

0.539
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.015

99.755

0.419
  pilC Vibrio campbellii strain DS40M4

41.133

99.51

0.409
  pilC Thermus thermophilus HB27

36.658

98.284

0.36