Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PGW99_RS01270 Genome accession   NZ_CP117520
Coordinates   249716..250576 (-) Length   286 a.a.
NCBI ID   WP_273778278.1    Uniprot ID   -
Organism   Acinetobacter sp. GSS19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 244716..255576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW99_RS01245 recN 244897..246558 (-) 1662 WP_273778272.1 DNA repair protein RecN -
  PGW99_RS01250 - 246990..247316 (+) 327 WP_273778274.1 pyrimidine/purine nucleoside phosphorylase -
  PGW99_RS01255 rlmB 247422..248168 (+) 747 WP_273778275.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PGW99_RS01260 - 248204..249115 (+) 912 WP_273778276.1 DMT family transporter -
  PGW99_RS01265 coaE 249109..249714 (-) 606 WP_273778277.1 dephospho-CoA kinase -
  PGW99_RS01270 pilD 249716..250576 (-) 861 WP_273778278.1 A24 family peptidase Machinery gene
  PGW99_RS01275 pilC 250576..251802 (-) 1227 WP_273778279.1 type II secretion system F family protein Machinery gene
  PGW99_RS01280 pilB 251835..253544 (-) 1710 WP_273778280.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGW99_RS01285 tpiA 253833..254627 (+) 795 WP_273778281.1 triose-phosphate isomerase -
  PGW99_RS01290 secG 254640..254969 (+) 330 WP_273778283.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31759.00 Da        Isoelectric Point: 7.8119

>NTDB_id=786210 PGW99_RS01270 WP_273778278.1 249716..250576(-) (pilD) [Acinetobacter sp. GSS19]
MQDFIQTLIDNPIALYLIVGLFSLCIGSFLNVVILRTPKIMEQQWQQECKLLLHPEQPIIEQSKFTLSHPASSCPKCASP
IRWYQNVPVLSWLLLRGKCGNCQNPISARYPFIEVLTAACSLLVVAVFGPGLQMLFGLFLTWALIALTFIDFDTQLLPDR
FTLPLAALGLAINSASIYTSPTSAIWGYVIGFLCLWIVYYLFKLLTGKEGMGYGDFKLLAALGAWMGPFMLPLIVLLSSL
VGAIIGIILLKVRQENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=786210 PGW99_RS01270 WP_273778278.1 249716..250576(-) (pilD) [Acinetobacter sp. GSS19]
ATGCAAGATTTTATCCAAACGCTAATCGACAACCCTATAGCACTTTATCTGATCGTCGGATTATTTAGCCTGTGTATTGG
CAGCTTTTTAAATGTGGTGATTTTACGTACACCGAAAATAATGGAGCAACAATGGCAACAGGAATGTAAGTTACTGCTGC
ATCCTGAACAGCCAATCATTGAGCAAAGTAAATTTACTCTGAGCCATCCAGCTTCAAGCTGTCCAAAATGTGCAAGTCCA
ATTCGCTGGTACCAGAATGTACCAGTATTGAGCTGGTTATTGTTGCGCGGAAAATGTGGTAACTGTCAGAATCCGATTAG
TGCACGTTATCCTTTTATTGAAGTCCTGACCGCCGCGTGCTCCCTACTAGTGGTTGCCGTATTCGGCCCCGGCCTGCAGA
TGCTGTTTGGCTTATTTTTGACCTGGGCACTGATTGCACTGACCTTTATTGATTTTGATACACAACTTTTACCAGATCGC
TTTACCTTACCTCTAGCTGCGCTCGGTCTAGCCATCAATAGTGCTTCTATTTACACCTCACCCACTTCTGCCATTTGGGG
TTATGTCATCGGCTTTTTATGTCTGTGGATTGTGTATTACCTGTTCAAACTCTTGACGGGTAAGGAAGGCATGGGCTACG
GTGATTTCAAACTGCTGGCTGCACTCGGTGCCTGGATGGGGCCATTCATGCTACCGTTGATTGTACTGCTCTCCTCATTG
GTCGGTGCAATCATCGGGATCATTTTATTAAAAGTGCGTCAAGAAAATCAGCCTTTTGCCTTTGGTCCTTATATTGCGAT
TGCAGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAGGTGTATTTAGGAGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.371

100

0.794
  pilD Acinetobacter baumannii D1279779

79.371

100

0.794
  pilD Vibrio cholerae strain A1552

55.762

94.056

0.524
  pilD Vibrio campbellii strain DS40M4

55.019

94.056

0.517
  pilD Neisseria gonorrhoeae MS11

46.591

92.308

0.43