Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH78_RS04450 Genome accession   NZ_CP117452
Coordinates   945905..947122 (-) Length   405 a.a.
NCBI ID   WP_305498757.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940905..952122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS04415 (PSH78_04415) - 941276..941476 (+) 201 WP_305498746.1 response regulator transcription factor -
  PSH78_RS04420 (PSH78_04420) - 941488..941691 (+) 204 WP_305498748.1 response regulator transcription factor -
  PSH78_RS04425 (PSH78_04425) - 941853..943241 (+) 1389 WP_305498750.1 hypothetical protein -
  PSH78_RS04430 (PSH78_04430) - 943474..944160 (+) 687 WP_305498752.1 energy-coupling factor ABC transporter permease -
  PSH78_RS04435 (PSH78_04435) yacG 944208..944414 (-) 207 WP_305498753.1 DNA gyrase inhibitor YacG -
  PSH78_RS04440 (PSH78_04440) coaE 944411..945034 (-) 624 WP_305498755.1 dephospho-CoA kinase -
  PSH78_RS04445 (PSH78_04445) pilD 945034..945903 (-) 870 WP_305498756.1 A24 family peptidase Machinery gene
  PSH78_RS04450 (PSH78_04450) pilC 945905..947122 (-) 1218 WP_305498757.1 type II secretion system F family protein Machinery gene
  PSH78_RS04455 (PSH78_04455) pilB 947125..948825 (-) 1701 WP_305498758.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSH78_RS04460 (PSH78_04460) - 949049..949459 (+) 411 WP_305498760.1 pilin -
  PSH78_RS04465 (PSH78_04465) - 949745..950098 (+) 354 WP_305498762.1 BON domain-containing protein -
  PSH78_RS04470 (PSH78_04470) - 950416..950712 (-) 297 WP_370871108.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44159.86 Da        Isoelectric Point: 10.0048

>NTDB_id=785476 PSH78_RS04450 WP_305498757.1 945905..947122(-) (pilC) [Pseudomonas sp. FP198]
MAVKAVKTDVYTWEGKDRKGTKMSGELTGQSPALVKAQLRKQGINPGKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVIAVAAVVTSILLIKVVPQFESVFSGFGAKLPAFTLMVIGLSEFLQDWWWVLLGGLVGGFFGVK
YALKRSQAFRDWRDKWLLKLPLVGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIKQDVSTGM
QLNFSMRTSGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVILGVVVGGLVVAMYMPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=785476 PSH78_RS04450 WP_305498757.1 945905..947122(-) (pilC) [Pseudomonas sp. FP198]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTACACGTGGGAAGGCAAGGACCGCAAAGGCACGAAAATGTCCGGCGAACT
GACCGGCCAGAGCCCGGCATTGGTCAAGGCGCAGCTGCGCAAGCAAGGGATCAACCCGGGCAAGGTACGCAAGAAGTCCA
CTTCGATATTCAGCAAGGGCAAACGCATCAAGCCGCTGGACATCGCGCTCTTCACCCGCCAGATGGCGACGATGCTCAAG
GCCGGCGTTCCTTTGCTGCAAGCATTCGACATCATCGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACGA
GGTGAAGCAGGAAGTCGCCGCCGGTAACAGCTTCGCCGCCTCGCTGCGCAAATGCCCACAGTATTTCGATGAGTTGTACT
GCAACCTGGTCGATGCCGGTGAGCAGGCCGGTGCCCTGGACACGCTGCTCGACCGAGTCGCGACCTACAAGGAAAAGAGC
GAAGCCCTGAAGGCCAAGATCAAGAAAGCCATGACCTACCCCGCGGCGGTGATCGCCGTCGCGGCAGTGGTCACCAGCAT
TTTGCTGATCAAGGTCGTGCCGCAGTTCGAGTCGGTATTTTCCGGCTTTGGCGCAAAACTGCCGGCCTTCACGCTGATGG
TCATCGGCTTGTCGGAATTCCTGCAAGACTGGTGGTGGGTGCTGCTGGGCGGGCTGGTAGGCGGATTTTTCGGGGTGAAA
TATGCCCTCAAGCGCTCCCAGGCGTTTCGTGACTGGCGAGACAAGTGGCTGCTCAAGCTGCCCTTGGTCGGGACCTTGAT
GTACAAGTCCGCCGTGGCGCGTTATGCGCGCACGCTCTCGACCACGTTCGCCGCCGGCGTGCCGCTGGTCGAAGCCCTCG
ACTCCGTCTCGGGCGCCACCGGTAACGTGGTATTCAAGCGTGCCGTGCAGCGGATCAAGCAGGACGTCTCGACCGGCATG
CAGTTGAATTTCTCGATGCGCACGTCGGGCATTTTTCCGAACCTGGCAATCCAGATGACTGCCATTGGCGAGGAGTCCGG
GGCGCTGGACGACATGCTCGACAAGGTGGCGAGTTTTTATGAGGCCGAAGTGGATAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGATCCTCGGGGTGGTCGTCGGCGGCCTGGTGGTTGCCATGTACATGCCCATCTTCCAA
CTTGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baylyi ADP1

59.352

99.012

0.588
  pilC Acinetobacter baumannii D1279779

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria gonorrhoeae MS11

42.786

99.259

0.425
  pilC Vibrio campbellii strain DS40M4

43.434

97.778

0.425
  pilG Neisseria meningitidis 44/76-A

41.832

99.753

0.417
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Thermus thermophilus HB27

38.404

99.012

0.38