Detailed information NTG0785475

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH78_RS04445
• Genome accession: NZ_CP117452
• Coordinates: 945034..945903 (-)
• Length: 289 a.a.
• NCBI ID: WP_305498756.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP198
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 940034..950903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH78_RS04410 (PSH78_04410)	-	940345..940971 (-)	627	WP_030140261.1	DUF1780 domain-containing protein	-
PSH78_RS04415 (PSH78_04415)	-	941276..941476 (+)	201	WP_305498746.1	response regulator transcription factor	-
PSH78_RS04420 (PSH78_04420)	-	941488..941691 (+)	204	WP_305498748.1	response regulator transcription factor	-
PSH78_RS04425 (PSH78_04425)	-	941853..943241 (+)	1389	WP_305498750.1	hypothetical protein	-
PSH78_RS04430 (PSH78_04430)	-	943474..944160 (+)	687	WP_305498752.1	energy-coupling factor ABC transporter permease	-
PSH78_RS04435 (PSH78_04435)	yacG	944208..944414 (-)	207	WP_305498753.1	DNA gyrase inhibitor YacG	-
PSH78_RS04440 (PSH78_04440)	coaE	944411..945034 (-)	624	WP_305498755.1	dephospho-CoA kinase	-
PSH78_RS04445 (PSH78_04445)	pilD	945034..945903 (-)	870	WP_305498756.1	A24 family peptidase	Machinery gene
PSH78_RS04450 (PSH78_04450)	pilC	945905..947122 (-)	1218	WP_305498757.1	type II secretion system F family protein	Machinery gene
PSH78_RS04455 (PSH78_04455)	pilB	947125..948825 (-)	1701	WP_305498758.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH78_RS04460 (PSH78_04460)	-	949049..949459 (+)	411	WP_305498760.1	pilin	-
PSH78_RS04465 (PSH78_04465)	-	949745..950098 (+)	354	WP_305498762.1	BON domain-containing protein	-
PSH78_RS04470 (PSH78_04470)	-	950416..950712 (-)	297	WP_370871108.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31920.09 Da
• Isoelectric Point: 8.3436

>NTDB_id=785475 PSH78_RS04445 WP_305498756.1 945034..945903(-) (pilD) [Pseudomonas sp. FP198]
MPLSEFFVLYPLAFVLTALLLGLIIGSFLNVLVWRLPKMLDREWRLQAQDLLGLQADAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCANCAAPIGKRYPLTELACGALSAFIAWHFGFGWQAAMAMLLSWGLLSMSLIDAEHQLLPDSLV
LPLLWLGLIVNSFGLFVPLNQALWGAVAGYLALWSVFWVFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRTRGAPTSTQIPFGPYLAIAGWIALLWGGQITHFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=785475 PSH78_RS04445 WP_305498756.1 945034..945903(-) (pilD) [Pseudomonas sp. FP198]
ATGCCCCTGAGCGAATTTTTCGTGCTTTACCCGCTGGCCTTCGTACTGACAGCGCTGCTGCTCGGGTTGATCATCGGCAG
CTTTCTCAACGTGCTGGTATGGCGTCTGCCGAAGATGCTCGATCGCGAGTGGCGCCTGCAAGCCCAGGACTTGCTCGGCT
TGCAGGCCGACGCCCCCGGTCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGTCCCCATTGTGGCCATCGCATCCGC
GCCTGGGAAAATATTCCGCTGTTGAGTTACCTGATGTTGCGCGGCCGCTGCGCCAACTGCGCCGCGCCCATCGGCAAGCG
CTACCCGCTGACCGAACTGGCCTGTGGCGCCCTGTCGGCGTTCATTGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCCA
TGGCGATGCTGCTGAGCTGGGGCCTGCTGTCCATGAGCCTGATCGACGCCGAGCACCAGTTGCTGCCCGATTCCCTGGTG
CTGCCATTGTTATGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCCCGCTGAACCAGGCATTGTGGGGGGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTCTTCAAGCTGCTGACCGGAAAAGAAGGCATGGGTTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTATCGGCGTCATTGTGCTGCGAACGCGCGGCGCGCCGACATCGACCCAGATCCCCTTCGGACCTTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCCACTTCTATTGGCAGTCAGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	98.27	0.516
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Neisseria gonorrhoeae MS11	48.889	93.426	0.457
pilD	Acinetobacter baumannii D1279779	46.237	96.54	0.446
pilD	Acinetobacter nosocomialis M2	46.237	96.54	0.446