Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   Q3V86_RS07495 Genome accession   NZ_CP130547
Coordinates   1564367..1564864 (-) Length   165 a.a.
NCBI ID   WP_001825340.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA04-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559367..1569864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V86_RS07470 gcvPB 1559529..1561001 (-) 1473 WP_000202179.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  Q3V86_RS07475 gcvPA 1560994..1562340 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V86_RS07480 gcvT 1562360..1563451 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V86_RS07485 - 1563610..1564134 (-) 525 WP_001015120.1 shikimate kinase -
  Q3V86_RS07490 - 1564124..1564270 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V86_RS07495 comGF 1564367..1564864 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V86_RS07500 comGE 1564782..1565081 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V86_RS07505 comGD 1565068..1565514 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V86_RS07510 comGC 1565492..1565803 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V86_RS07515 comGB 1565817..1566887 (-) 1071 Protein_1477 competence type IV pilus assembly protein ComGB -
  Q3V86_RS07520 comGA 1566859..1567833 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V86_RS07525 - 1567885..1568508 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V86_RS07530 - 1568505..1568834 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V86_RS07535 - 1568834..1569820 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19179.92 Da        Isoelectric Point: 10.2192

>NTDB_id=785475 Q3V86_RS07495 WP_001825340.1 1564367..1564864(-) (comGF) [Staphylococcus aureus strain SA04-SX]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=785475 Q3V86_RS07495 WP_001825340.1 1564367..1564864(-) (comGF) [Staphylococcus aureus strain SA04-SX]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGCATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

96.97

100

0.97