Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH79_RS23410 Genome accession   NZ_CP117445
Coordinates   5235086..5236303 (+) Length   405 a.a.
NCBI ID   WP_305439846.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5230086..5241303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS23390 (PSH79_23385) - 5231548..5231844 (+) 297 WP_305439842.1 DUF2845 domain-containing protein -
  PSH79_RS23395 (PSH79_23390) - 5232071..5232427 (-) 357 WP_103306538.1 BON domain-containing protein -
  PSH79_RS23400 (PSH79_23395) - 5232725..5233156 (-) 432 WP_305439844.1 pilin -
  PSH79_RS23405 (PSH79_23400) pilB 5233383..5235083 (+) 1701 WP_305439845.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSH79_RS23410 (PSH79_23405) pilC 5235086..5236303 (+) 1218 WP_305439846.1 type II secretion system F family protein Machinery gene
  PSH79_RS23415 (PSH79_23410) pilD 5236305..5237177 (+) 873 WP_305439847.1 A24 family peptidase Machinery gene
  PSH79_RS23420 (PSH79_23415) coaE 5237174..5237797 (+) 624 WP_305439849.1 dephospho-CoA kinase -
  PSH79_RS23425 (PSH79_23420) yacG 5237794..5237991 (+) 198 WP_305439851.1 DNA gyrase inhibitor YacG -
  PSH79_RS23430 (PSH79_23425) - 5237998..5238213 (-) 216 WP_007959584.1 hypothetical protein -
  PSH79_RS23435 (PSH79_23430) - 5238279..5238968 (-) 690 WP_305439852.1 energy-coupling factor ABC transporter permease -
  PSH79_RS23440 (PSH79_23435) - 5239215..5240669 (+) 1455 WP_305439854.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44171.08 Da        Isoelectric Point: 10.1772

>NTDB_id=785294 PSH79_RS23410 WP_305439846.1 5235086..5236303(+) (pilC) [Pseudomonas sp. FP2196]
MAVKAAKISVYAWEGTDKKGSKLSGELSGLNPALIKAQLRKQGISPGKVRKKSASILSFGKRIKVRDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFANALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMVISLSEFMQQWWWAILIFLVVAFFGIR
HALKTSQALRDRRDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGAAGNVVFKRAILRIRQDVSTGM
QLNFSMRTTGVFPNMAVQMTAIGEESGALDEMLAKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=785294 PSH79_RS23410 WP_305439846.1 5235086..5236303(+) (pilC) [Pseudomonas sp. FP2196]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGTACGGACAAGAAAGGCAGCAAACTCAGTGGTGAGTT
GAGCGGTCTTAATCCGGCCTTGATCAAGGCTCAACTACGCAAACAGGGGATCAGTCCGGGCAAGGTGCGCAAAAAATCCG
CATCGATTCTGAGTTTCGGCAAACGCATCAAGGTCCGGGACATCGCGCTGTTTACCCGGCAAATGGCAACCATGATGAAG
GCCGGAGTGCCGCTGTTGCAGTCGTTCGACATCATCGGCGAGGGCTTCGAAAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAGGTCGCCGCCGGTAACAGTTTCGCCAATGCCCTGCGCAAAAAGCCGCAATATTTCGACGAGTTGTATT
GCAACCTGGTGGATGCCGGCGAACAGTCCGGCGCGCTTGATACGTTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAGAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCCACCGCCGTGGTGCTGGTGGCCGCCGTAGTGACAGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCCAGTCGGTGTTTTCCGGATTCGGCGCCGAACTGCCGGGCTTTACCCTGATGG
TGATCAGCCTCTCGGAATTCATGCAGCAATGGTGGTGGGCAATACTCATCTTTCTGGTAGTGGCATTCTTCGGTATTCGA
CATGCGCTGAAAACTTCCCAGGCTTTGCGCGACCGTCGCGACACCTGGCTGCTGAAACTACCGTTGGTGGGAACTTTGAT
GTACAAGTCCGCCGTAGCGCGATTTGCCCGAACCCTGTCGACTACCTTCGCTGCCGGGGTGCCCCTGGTCGAAGCGCTGG
ATTCGGTGGCAGGGGCCGCTGGCAACGTCGTGTTCAAACGCGCGATTCTGCGGATTCGCCAGGACGTTTCCACCGGCATG
CAACTGAATTTTTCGATGCGCACCACCGGGGTGTTTCCCAACATGGCGGTGCAAATGACCGCGATCGGCGAAGAATCCGG
CGCGCTGGACGAAATGCTCGCCAAAGTTGCAGGATTTTACGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TCATGGAGCCGTTCATCATGGTGGTCTTGGGGGTGATCGTCGGTGGTCTGGTGGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baylyi ADP1

58.333

100

0.588
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

53.25

98.765

0.526
  pilG Neisseria gonorrhoeae MS11

43.672

99.506

0.435
  pilC Vibrio cholerae strain A1552

43.939

97.778

0.43
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio campbellii strain DS40M4

41.162

100

0.42
  pilC Thermus thermophilus HB27

38.903

99.012

0.385