Detailed information NTG0785295

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH79_RS23415
• Genome accession: NZ_CP117445
• Coordinates: 5236305..5237177 (+)
• Length: 290 a.a.
• NCBI ID: WP_305439847.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2196
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5231305..5242177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH79_RS23390 (PSH79_23385)	-	5231548..5231844 (+)	297	WP_305439842.1	DUF2845 domain-containing protein	-
PSH79_RS23395 (PSH79_23390)	-	5232071..5232427 (-)	357	WP_103306538.1	BON domain-containing protein	-
PSH79_RS23400 (PSH79_23395)	-	5232725..5233156 (-)	432	WP_305439844.1	pilin	-
PSH79_RS23405 (PSH79_23400)	pilB	5233383..5235083 (+)	1701	WP_305439845.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH79_RS23410 (PSH79_23405)	pilC	5235086..5236303 (+)	1218	WP_305439846.1	type II secretion system F family protein	Machinery gene
PSH79_RS23415 (PSH79_23410)	pilD	5236305..5237177 (+)	873	WP_305439847.1	A24 family peptidase	Machinery gene
PSH79_RS23420 (PSH79_23415)	coaE	5237174..5237797 (+)	624	WP_305439849.1	dephospho-CoA kinase	-
PSH79_RS23425 (PSH79_23420)	yacG	5237794..5237991 (+)	198	WP_305439851.1	DNA gyrase inhibitor YacG	-
PSH79_RS23430 (PSH79_23425)	-	5237998..5238213 (-)	216	WP_007959584.1	hypothetical protein	-
PSH79_RS23435 (PSH79_23430)	-	5238279..5238968 (-)	690	WP_305439852.1	energy-coupling factor ABC transporter permease	-
PSH79_RS23440 (PSH79_23435)	-	5239215..5240669 (+)	1455	WP_305439854.1	TrkH family potassium uptake protein	-
PSH79_RS23445 (PSH79_23440)	-	5240774..5241769 (+)	996	WP_305439856.1	TRAP transporter substrate-binding protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32208.48 Da
• Isoelectric Point: 6.8137

>NTDB_id=785295 PSH79_RS23415 WP_305439847.1 5236305..5237177(+) (pilD) [Pseudomonas sp. FP2196]
MPIDELFTLYPLAFVFSALSLGLVVGSFLNVLIWRLPKMLERDWRQQALDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLCLRGRCSACAAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLMG
AIIGVILLRLRDQETSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=785295 PSH79_RS23415 WP_305439847.1 5236305..5237177(+) (pilD) [Pseudomonas sp. FP2196]
ATGCCTATCGACGAACTGTTTACCCTGTATCCATTGGCCTTTGTCTTTTCTGCACTGTCGCTTGGGCTGGTTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCCCTGGACGTACTTGGCC
TTCCCGGCGAAACGCCGCTGCCGACCTACAACCTGATGCTGCCCCACTCCGAGTGCCCGCACTGTGCGCATCGAATCCGC
GCCTGGGAAAACATTCCGTTACTCAGTTATCTGTGTCTGCGCGGACGTTGTTCCGCATGTGCCGCGCCGATCAGCAAACG
CTATCCGCTGACGGAACTGGCCTGCGGCCTGCTCTCGGCATTCATTGCCTGGCACCTGGGATTCGGCTGGCCGGCGTGTC
TGTTGATCGTCCTCACCTGGGGCTTGCTGGCAATGAGTCTGATCGACGCAGAGCACCAATTGCTGCCCGATGTGCTGGTG
CTGCCCTTGTTATGGCTGGGGCTGATCGTCAATAGTTTCGGGTTGTTCGTGCCGTTGCACGATGCACTGTGGGGTGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGTATCGGCCACGGTGATT
TCAAGCTGCTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACGATCCTGCTGTCATCGCTGATGGGC
GCGATCATCGGAGTGATTTTGCTGCGCCTGCGCGACCAGGAAACCTCGACGCCAATCCCGTTTGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.61	97.241	0.531
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	49.624	91.724	0.455
pilD	Acinetobacter nosocomialis M2	49.624	91.724	0.455
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448