Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH83_RS24465 Genome accession   NZ_CP117443
Coordinates   5575480..5576697 (+) Length   405 a.a.
NCBI ID   WP_122564917.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2262     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5570480..5581697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH83_RS24445 (PSH83_24445) - 5571810..5572106 (+) 297 WP_305491118.1 DUF2845 domain-containing protein -
  PSH83_RS24450 (PSH83_24450) - 5572442..5572795 (-) 354 WP_003205664.1 BON domain-containing protein -
  PSH83_RS24455 (PSH83_24455) - 5573124..5573552 (-) 429 WP_305491119.1 pilin -
  PSH83_RS24460 (PSH83_24460) pilB 5573777..5575477 (+) 1701 WP_305491120.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSH83_RS24465 (PSH83_24465) pilC 5575480..5576697 (+) 1218 WP_122564917.1 type II secretion system F family protein Machinery gene
  PSH83_RS24470 (PSH83_24470) pilD 5576699..5577568 (+) 870 WP_305491121.1 A24 family peptidase Machinery gene
  PSH83_RS24475 (PSH83_24475) coaE 5577581..5578204 (+) 624 WP_122564919.1 dephospho-CoA kinase -
  PSH83_RS24480 (PSH83_24480) yacG 5578201..5578407 (+) 207 WP_305491122.1 DNA gyrase inhibitor YacG -
  PSH83_RS24485 (PSH83_24485) - 5578404..5578619 (-) 216 WP_053125334.1 hypothetical protein -
  PSH83_RS24490 (PSH83_24490) - 5578683..5579369 (-) 687 WP_305468537.1 energy-coupling factor ABC transporter permease -
  PSH83_RS24495 (PSH83_24495) - 5579529..5580155 (+) 627 WP_025215531.1 DUF1780 domain-containing protein -
  PSH83_RS24500 (PSH83_24500) - 5580152..5580679 (+) 528 WP_305491123.1 MOSC domain-containing protein -
  PSH83_RS24505 (PSH83_24505) - 5580732..5580905 (+) 174 WP_003205686.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44328.12 Da        Isoelectric Point: 10.0551

>NTDB_id=785241 PSH83_RS24465 WP_122564917.1 5575480..5576697(+) (pilC) [Pseudomonas beijingensis strain FP2262]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINPEKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDQVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQQWWWMLLGALVGTFFGVK
YALKRSQAFRDWRDKWLLKLPLIGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVILGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=785241 PSH83_RS24465 WP_122564917.1 5575480..5576697(+) (pilC) [Pseudomonas beijingensis strain FP2262]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTATACGTGGGAAGGCAAAGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGCCAGAGCCCGGCCCTGGTCAAGGCACAGCTGCGCAAGCAAGGCATCAACCCGGAGAAGGTACGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGCTGGATATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCTGGCGTGCCGCTGTTGCAGGCGTTCGACATCATCGGCGAAGGTTTCGACAACGCCAACATGCGCAAGCTGGTGGACCA
GGTGAAGCAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCTTCGCTGCGCAAATGCCCGCAATATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAACAGGCCGGTGCCTTGGACACCCTGCTGGACCGGGTGGCGACTTACAAGGAAAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGACGGCAGTGATACTCGTCGCAGCGGTGGTCACCGGCAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTCTTCTCCGGGTTCGGGGCGCAACTGCCGGCCTTCACGGTGATGG
TCATCGGCTTGTCGGAATTCATGCAGCAATGGTGGTGGATGTTGCTTGGCGCCTTGGTGGGAACGTTCTTCGGGGTGAAA
TATGCCCTCAAGCGTTCCCAGGCGTTTCGTGACTGGCGAGACAAGTGGCTGCTCAAGCTCCCCTTGATCGGCACCTTGAT
GTACAAGTCTGCGGTGGCGCGCTTCGCCCGCACGCTCTCGACGACATTCGCCGCTGGCGTGCCGCTGGTCGAAGCCCTCG
ATTCGGTATCGGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCAGCGCATCCGCCAGGACGTCTCTACCGGCATG
CAGTTGAATTTTTCCATGCGCGCCTCAGGCATCTTTCCGAACCTGGCCATCCAGATGACTGCCATCGGCGAGGAATCCGG
CGCACTGGACGACATGCTCGACAAGGTGGCGAGCTTTTATGAGGCCGAAGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGATCCTGGGGGTTGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

59.548

98.272

0.585
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

55.808

97.778

0.546
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilC Vibrio campbellii strain DS40M4

43.687

97.778

0.427
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Thermus thermophilus HB27

37.656

99.012

0.373