Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH83_RS24470 | Genome accession | NZ_CP117443 |
| Coordinates | 5576699..5577568 (+) | Length | 289 a.a. |
| NCBI ID | WP_305491121.1 | Uniprot ID | - |
| Organism | Pseudomonas beijingensis strain FP2262 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5571699..5582568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH83_RS24445 (PSH83_24445) | - | 5571810..5572106 (+) | 297 | WP_305491118.1 | DUF2845 domain-containing protein | - |
| PSH83_RS24450 (PSH83_24450) | - | 5572442..5572795 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| PSH83_RS24455 (PSH83_24455) | - | 5573124..5573552 (-) | 429 | WP_305491119.1 | pilin | - |
| PSH83_RS24460 (PSH83_24460) | pilB | 5573777..5575477 (+) | 1701 | WP_305491120.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH83_RS24465 (PSH83_24465) | pilC | 5575480..5576697 (+) | 1218 | WP_122564917.1 | type II secretion system F family protein | Machinery gene |
| PSH83_RS24470 (PSH83_24470) | pilD | 5576699..5577568 (+) | 870 | WP_305491121.1 | A24 family peptidase | Machinery gene |
| PSH83_RS24475 (PSH83_24475) | coaE | 5577581..5578204 (+) | 624 | WP_122564919.1 | dephospho-CoA kinase | - |
| PSH83_RS24480 (PSH83_24480) | yacG | 5578201..5578407 (+) | 207 | WP_305491122.1 | DNA gyrase inhibitor YacG | - |
| PSH83_RS24485 (PSH83_24485) | - | 5578404..5578619 (-) | 216 | WP_053125334.1 | hypothetical protein | - |
| PSH83_RS24490 (PSH83_24490) | - | 5578683..5579369 (-) | 687 | WP_305468537.1 | energy-coupling factor ABC transporter permease | - |
| PSH83_RS24495 (PSH83_24495) | - | 5579529..5580155 (+) | 627 | WP_025215531.1 | DUF1780 domain-containing protein | - |
| PSH83_RS24500 (PSH83_24500) | - | 5580152..5580679 (+) | 528 | WP_305491123.1 | MOSC domain-containing protein | - |
| PSH83_RS24505 (PSH83_24505) | - | 5580732..5580905 (+) | 174 | WP_003205686.1 | DUF3094 domain-containing protein | - |
| PSH83_RS24510 (PSH83_24510) | - | 5580966..5582264 (+) | 1299 | WP_305491124.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31898.13 Da Isoelectric Point: 7.7294
>NTDB_id=785242 PSH83_RS24470 WP_305491121.1 5576699..5577568(+) (pilD) [Pseudomonas beijingensis strain FP2262]
MPLSDFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEPLVPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSDFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEPLVPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=785242 PSH83_RS24470 WP_305491121.1 5576699..5577568(+) (pilD) [Pseudomonas beijingensis strain FP2262]
ATGCCCCTGAGCGATTTTTTCGTGCTGTACCCCCTGGCGTTCGTGCTTGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAATCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAACCCCTGGTCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCACCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGTTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGATTTTTTCGTGCTGTACCCCCTGGCGTTCGTGCTTGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAATCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAACCCCTGGTCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCACCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGTTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
51.748 |
98.962 |
0.512 |
| pilD | Vibrio campbellii strain DS40M4 |
50.175 |
98.616 |
0.495 |
| pilD | Neisseria gonorrhoeae MS11 |
47.735 |
99.308 |
0.474 |
| pilD | Acinetobacter baumannii D1279779 |
48.214 |
96.886 |
0.467 |
| pilD | Acinetobacter nosocomialis M2 |
48.214 |
96.886 |
0.467 |