Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSH84_RS24125 Genome accession   NZ_CP117425
Coordinates   5444639..5445856 (+) Length   405 a.a.
NCBI ID   WP_122564917.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP830     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5439639..5450856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS24105 (PSH84_24100) - 5441051..5441347 (+) 297 WP_305468531.1 DUF2845 domain-containing protein -
  PSH84_RS24110 (PSH84_24105) - 5441683..5442036 (-) 354 WP_025215523.1 BON domain-containing protein -
  PSH84_RS24115 (PSH84_24110) pilA 5442304..5442711 (-) 408 WP_122564964.1 pilin Machinery gene
  PSH84_RS24120 (PSH84_24115) pilB 5442936..5444636 (+) 1701 WP_305481917.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSH84_RS24125 (PSH84_24120) pilC 5444639..5445856 (+) 1218 WP_122564917.1 type II secretion system F family protein Machinery gene
  PSH84_RS24130 (PSH84_24125) pilD 5445858..5446727 (+) 870 WP_305468535.1 A24 family peptidase Machinery gene
  PSH84_RS24135 (PSH84_24130) coaE 5446740..5447363 (+) 624 WP_122564919.1 dephospho-CoA kinase -
  PSH84_RS24140 (PSH84_24135) yacG 5447360..5447566 (+) 207 WP_018609255.1 DNA gyrase inhibitor YacG -
  PSH84_RS24145 (PSH84_24140) - 5447563..5447778 (-) 216 WP_053125334.1 hypothetical protein -
  PSH84_RS24150 (PSH84_24145) - 5447842..5448528 (-) 687 WP_305468537.1 energy-coupling factor ABC transporter permease -
  PSH84_RS24155 (PSH84_24150) - 5448688..5449314 (+) 627 WP_025215531.1 DUF1780 domain-containing protein -
  PSH84_RS24160 (PSH84_24155) - 5449311..5449838 (+) 528 WP_305481918.1 MOSC domain-containing protein -
  PSH84_RS24165 (PSH84_24160) - 5449891..5450064 (+) 174 WP_076386361.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44328.12 Da        Isoelectric Point: 10.0551

>NTDB_id=784787 PSH84_RS24125 WP_122564917.1 5444639..5445856(+) (pilC) [Pseudomonas beijingensis strain FP830]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINPEKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDQVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQQWWWMLLGALVGTFFGVK
YALKRSQAFRDWRDKWLLKLPLIGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVILGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=784787 PSH84_RS24125 WP_122564917.1 5444639..5445856(+) (pilC) [Pseudomonas beijingensis strain FP830]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTATACGTGGGAAGGCAAAGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGCCAGAGCCCAGCCCTGGTCAAGGCACAACTGCGCAAGCAAGGCATCAACCCGGAGAAGGTGCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGCTGGACATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCTGGCGTGCCGCTGTTGCAGGCGTTCGACATCATCGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACCA
GGTGAAGCAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCCTCGCTGCGCAAATGCCCGCAATATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAACAGGCCGGTGCGTTGGACACCCTGCTGGACCGGGTGGCGACTTACAAGGAAAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACGGCAGTGATACTCGTCGCAGCGGTGGTCACCGGCAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCAGTCTTCTCCGGGTTCGGGGCGCAGCTGCCGGCTTTCACGGTGATGG
TCATCGGCCTGTCGGAATTCATGCAGCAATGGTGGTGGATGTTGCTTGGCGCCTTGGTGGGGACGTTCTTCGGGGTGAAA
TATGCCCTCAAGCGGTCCCAGGCGTTTCGTGACTGGCGAGACAAGTGGCTGCTCAAGCTCCCCTTGATCGGCACCTTGAT
GTACAAGTCTGCGGTGGCGCGCTTCGCCCGCACGCTCTCGACGACATTCGCCGCTGGCGTGCCGCTGGTCGAAGCCCTCG
ATTCGGTATCGGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCAGCGCATCCGCCAGGACGTCTCCACCGGCATG
CAGTTGAATTTTTCCATGCGCGCCTCAGGCATCTTTCCGAACCTGGCCATCCAGATGACCGCCATCGGCGAGGAATCCGG
CGCGCTGGACGACATGCTCGACAAGGTGGCGAGCTTTTATGAGGCCGAAGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGATCCTGGGGGTCGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

59.548

98.272

0.585
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

55.808

97.778

0.546
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilC Vibrio campbellii strain DS40M4

43.687

97.778

0.427
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Thermus thermophilus HB27

37.656

99.012

0.373