Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PSH84_RS24130 | Genome accession | NZ_CP117425 |
| Coordinates | 5445858..5446727 (+) | Length | 289 a.a. |
| NCBI ID | WP_305468535.1 | Uniprot ID | - |
| Organism | Pseudomonas beijingensis strain FP830 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5440858..5451727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSH84_RS24105 (PSH84_24100) | - | 5441051..5441347 (+) | 297 | WP_305468531.1 | DUF2845 domain-containing protein | - |
| PSH84_RS24110 (PSH84_24105) | - | 5441683..5442036 (-) | 354 | WP_025215523.1 | BON domain-containing protein | - |
| PSH84_RS24115 (PSH84_24110) | pilA | 5442304..5442711 (-) | 408 | WP_122564964.1 | pilin | Machinery gene |
| PSH84_RS24120 (PSH84_24115) | pilB | 5442936..5444636 (+) | 1701 | WP_305481917.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSH84_RS24125 (PSH84_24120) | pilC | 5444639..5445856 (+) | 1218 | WP_122564917.1 | type II secretion system F family protein | Machinery gene |
| PSH84_RS24130 (PSH84_24125) | pilD | 5445858..5446727 (+) | 870 | WP_305468535.1 | A24 family peptidase | Machinery gene |
| PSH84_RS24135 (PSH84_24130) | coaE | 5446740..5447363 (+) | 624 | WP_122564919.1 | dephospho-CoA kinase | - |
| PSH84_RS24140 (PSH84_24135) | yacG | 5447360..5447566 (+) | 207 | WP_018609255.1 | DNA gyrase inhibitor YacG | - |
| PSH84_RS24145 (PSH84_24140) | - | 5447563..5447778 (-) | 216 | WP_053125334.1 | hypothetical protein | - |
| PSH84_RS24150 (PSH84_24145) | - | 5447842..5448528 (-) | 687 | WP_305468537.1 | energy-coupling factor ABC transporter permease | - |
| PSH84_RS24155 (PSH84_24150) | - | 5448688..5449314 (+) | 627 | WP_025215531.1 | DUF1780 domain-containing protein | - |
| PSH84_RS24160 (PSH84_24155) | - | 5449311..5449838 (+) | 528 | WP_305481918.1 | MOSC domain-containing protein | - |
| PSH84_RS24165 (PSH84_24160) | - | 5449891..5450064 (+) | 174 | WP_076386361.1 | DUF3094 family protein | - |
| PSH84_RS24170 (PSH84_24165) | - | 5450125..5451423 (+) | 1299 | WP_305468539.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31829.97 Da Isoelectric Point: 7.7294
>NTDB_id=784788 PSH84_RS24130 WP_305468535.1 5445858..5446727(+) (pilD) [Pseudomonas beijingensis strain FP830]
MPLSEFFVLYPVAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDSEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPVAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHELLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGKRYPLTEVACGALSAFVAWHFGFGWHAAMVLVLTWGLLGMSLIDSEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=784788 PSH84_RS24130 WP_305468535.1 5445858..5446727(+) (pilD) [Pseudomonas beijingensis strain FP830]
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCGTGGCTTTTGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAAGCCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCGCCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATTCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACTGGCAAGGAAGGCATGGGCTACGGAGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTGATCGGGGTCATTGTGCTGCGCTTGCGTGACGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTTTTCGTGCTGTATCCCGTGGCTTTTGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGAGCTGCTAGGCC
TGCCCGCCGAAGCCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAGAACATTCCGCTATTGAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGTTGCGCCGCGCCCATCGGCAAGCG
CTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCTGCGA
TGGTGTTGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATTCCGAGCATCAATTGCTGCCCGATACCTTGGTG
TTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACTGGCAAGGAAGGCATGGGCTACGGAGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCGTGATCGGGGTCATTGTGCTGCGCTTGCGTGACGCTCCCGGGTCGACGCAAATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |
| pilD | Acinetobacter baumannii D1279779 |
47.687 |
97.232 |
0.464 |
| pilD | Acinetobacter nosocomialis M2 |
47.687 |
97.232 |
0.464 |