Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IL310_RS12825 Genome accession   NZ_CP117409
Coordinates   2133625..2134014 (-) Length   129 a.a.
NCBI ID   WP_201248529.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2127525..2134014 2133625..2134014 within 0


Gene organization within MGE regions


Location: 2127525..2134014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS12795 (IL310_12800) tmk 2127525..2128160 (-) 636 WP_012897230.1 dTMP kinase -
  IL310_RS12800 (IL310_12805) yycF 2128338..2129039 (+) 702 WP_003131580.1 response regulator YycF -
  IL310_RS12805 (IL310_12810) - 2129032..2130474 (+) 1443 WP_201248531.1 cell wall metabolism sensor histidine kinase WalK -
  IL310_RS12810 (IL310_12815) - 2130646..2131458 (+) 813 WP_201248530.1 MBL fold metallo-hydrolase -
  IL310_RS12815 (IL310_12820) groL 2131504..2133132 (-) 1629 WP_003131585.1 chaperonin GroEL -
  IL310_RS12820 (IL310_12825) groES 2133221..2133505 (-) 285 WP_003131589.1 co-chaperone GroES -
  IL310_RS12825 (IL310_12830) ssbB 2133625..2134014 (-) 390 WP_201248529.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14629.71 Da        Isoelectric Point: 7.0179

>NTDB_id=784654 IL310_RS12825 WP_201248529.1 2133625..2134014(-) (ssbB) [Lactococcus lactis strain LB7]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRLFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=784654 IL310_RS12825 WP_201248529.1 2133625..2134014(-) (ssbB) [Lactococcus lactis strain LB7]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCTTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364