Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IL310_RS06295 | Genome accession | NZ_CP117409 |
| Coordinates | 810659..811084 (+) | Length | 141 a.a. |
| NCBI ID | WP_139917197.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain LB7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 805659..816084
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IL310_RS06240 (IL310_06245) | - | 805928..806113 (+) | 186 | WP_139917209.1 | hypothetical protein | - |
| IL310_RS06245 (IL310_06250) | - | 806070..806486 (-) | 417 | WP_201248193.1 | hypothetical protein | - |
| IL310_RS06250 (IL310_06255) | - | 806670..806861 (+) | 192 | WP_136122496.1 | hypothetical protein | - |
| IL310_RS06255 (IL310_06260) | - | 806868..807107 (-) | 240 | WP_136122497.1 | hypothetical protein | - |
| IL310_RS06260 (IL310_06265) | - | 807212..807460 (+) | 249 | WP_021468383.1 | helix-turn-helix transcriptional regulator | - |
| IL310_RS06265 (IL310_06270) | - | 807476..808264 (+) | 789 | WP_201248192.1 | phage antirepressor KilAC domain-containing protein | - |
| IL310_RS06270 (IL310_06275) | - | 808278..808616 (+) | 339 | WP_201248191.1 | hypothetical protein | - |
| IL310_RS06275 (IL310_06280) | - | 808847..809071 (-) | 225 | WP_098384010.1 | hypothetical protein | - |
| IL310_RS06280 (IL310_06285) | - | 809167..809403 (+) | 237 | WP_139917203.1 | DUF1408 domain-containing protein | - |
| IL310_RS06285 (IL310_06290) | - | 809504..809899 (+) | 396 | WP_139917201.1 | hypothetical protein | - |
| IL310_RS06290 (IL310_06295) | - | 809908..810666 (+) | 759 | WP_201248190.1 | Rad52/Rad22 family DNA repair protein | - |
| IL310_RS06295 (IL310_06300) | ssb | 810659..811084 (+) | 426 | WP_139917197.1 | single-stranded DNA-binding protein | Machinery gene |
| IL310_RS06300 (IL310_06305) | - | 811228..811554 (+) | 327 | WP_139917193.1 | HNH endonuclease | - |
| IL310_RS06305 (IL310_06310) | - | 811554..812357 (+) | 804 | WP_201248189.1 | helix-turn-helix domain-containing protein | - |
| IL310_RS06310 (IL310_06315) | - | 812338..812559 (+) | 222 | WP_139917189.1 | hypothetical protein | - |
| IL310_RS06315 (IL310_06320) | - | 812661..813329 (-) | 669 | WP_139917187.1 | type 1 glutamine amidotransferase | - |
| IL310_RS06320 (IL310_06325) | - | 813527..813913 (-) | 387 | WP_139917185.1 | DUF805 domain-containing protein | - |
| IL310_RS06325 (IL310_06330) | - | 814133..814288 (-) | 156 | WP_014572174.1 | hypothetical protein | - |
| IL310_RS06330 (IL310_06335) | - | 814409..814678 (-) | 270 | WP_139917182.1 | DUF3892 domain-containing protein | - |
| IL310_RS06335 (IL310_06340) | - | 814795..815184 (+) | 390 | WP_139917180.1 | DUF722 domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15794.56 Da Isoelectric Point: 5.1972
>NTDB_id=784639 IL310_RS06295 WP_139917197.1 810659..811084(+) (ssb) [Lactococcus lactis strain LB7]
MINNVTLVGRIAKEPELRYTQQNKAVASFTLAVNRQFKNFNGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYIMEVVASNFQVLEKSNQANGERVGNPAAKPQNNDSFGSDPMEISDDDLPF
MINNVTLVGRIAKEPELRYTQQNKAVASFTLAVNRQFKNFNGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYIMEVVASNFQVLEKSNQANGERVGNPAAKPQNNDSFGSDPMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=784639 IL310_RS06295 WP_139917197.1 810659..811084(+) (ssb) [Lactococcus lactis strain LB7]
ATGATTAACAATGTCACTCTAGTAGGGCGAATCGCTAAGGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTTCAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGTAGTATTCAAACTCGC
AACTATGAGAATCAACAAGGGCAACGAGTTTATATTATGGAGGTTGTCGCAAGTAATTTCCAAGTACTTGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAACAATGTCACTCTAGTAGGGCGAATCGCTAAGGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTTCAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGTAGTATTCAAACTCGC
AACTATGAGAATCAACAAGGGCAACGAGTTTATATTATGGAGGTTGTCGCAAGTAATTTCCAAGTACTTGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.61 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.844 |
100 |
0.418 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.844 |
100 |
0.418 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.808 |
73.759 |
0.404 |
| ssbA | Streptococcus mutans UA159 |
38.298 |
100 |
0.383 |