Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IL310_RS06295 Genome accession   NZ_CP117409
Coordinates   810659..811084 (+) Length   141 a.a.
NCBI ID   WP_139917197.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 796649..831406 810659..811084 within 0


Gene organization within MGE regions


Location: 796649..831406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS06185 (IL310_06190) - 796649..797941 (+) 1293 WP_010906053.1 uracil-xanthine permease family protein -
  IL310_RS06190 (IL310_06195) - 798124..799056 (+) 933 WP_015426755.1 aspartate carbamoyltransferase catalytic subunit -
  IL310_RS06195 (IL310_06200) - 799120..800193 (+) 1074 WP_201248195.1 carbamoyl phosphate synthase small subunit -
  IL310_RS06200 (IL310_06205) - 800298..801452 (-) 1155 WP_274448862.1 site-specific integrase -
  IL310_RS06205 (IL310_06210) - 801573..802349 (-) 777 WP_139917219.1 glycoside hydrolase, family 25 -
  IL310_RS06210 (IL310_06215) - 802458..803198 (-) 741 WP_201248194.1 hypothetical protein -
  IL310_RS06215 (IL310_06220) - 803301..803639 (-) 339 WP_103054941.1 DUF898 family protein -
  IL310_RS06220 (IL310_06225) - 803746..804285 (-) 540 WP_139917215.1 PH domain-containing protein -
  IL310_RS06225 (IL310_06230) - 804339..804538 (-) 200 Protein_809 hypothetical protein -
  IL310_RS06230 (IL310_06235) - 804553..805140 (-) 588 WP_139917213.1 hypothetical protein -
  IL310_RS06235 (IL310_06240) - 805151..805675 (-) 525 WP_139917211.1 helix-turn-helix domain-containing protein -
  IL310_RS06240 (IL310_06245) - 805928..806113 (+) 186 WP_139917209.1 hypothetical protein -
  IL310_RS06245 (IL310_06250) - 806070..806486 (-) 417 WP_201248193.1 hypothetical protein -
  IL310_RS06250 (IL310_06255) - 806670..806861 (+) 192 WP_136122496.1 hypothetical protein -
  IL310_RS06255 (IL310_06260) - 806868..807107 (-) 240 WP_136122497.1 hypothetical protein -
  IL310_RS06260 (IL310_06265) - 807212..807460 (+) 249 WP_021468383.1 helix-turn-helix transcriptional regulator -
  IL310_RS06265 (IL310_06270) - 807476..808264 (+) 789 WP_201248192.1 phage antirepressor KilAC domain-containing protein -
  IL310_RS06270 (IL310_06275) - 808278..808616 (+) 339 WP_201248191.1 hypothetical protein -
  IL310_RS06275 (IL310_06280) - 808847..809071 (-) 225 WP_098384010.1 hypothetical protein -
  IL310_RS06280 (IL310_06285) - 809167..809403 (+) 237 WP_139917203.1 DUF1408 domain-containing protein -
  IL310_RS06285 (IL310_06290) - 809504..809899 (+) 396 WP_139917201.1 hypothetical protein -
  IL310_RS06290 (IL310_06295) - 809908..810666 (+) 759 WP_201248190.1 Rad52/Rad22 family DNA repair protein -
  IL310_RS06295 (IL310_06300) ssb 810659..811084 (+) 426 WP_139917197.1 single-stranded DNA-binding protein Machinery gene
  IL310_RS06300 (IL310_06305) - 811228..811554 (+) 327 WP_139917193.1 HNH endonuclease -
  IL310_RS06305 (IL310_06310) - 811554..812357 (+) 804 WP_201248189.1 helix-turn-helix domain-containing protein -
  IL310_RS06310 (IL310_06315) - 812338..812559 (+) 222 WP_139917189.1 hypothetical protein -
  IL310_RS06315 (IL310_06320) - 812661..813329 (-) 669 WP_139917187.1 type 1 glutamine amidotransferase -
  IL310_RS06320 (IL310_06325) - 813527..813913 (-) 387 WP_139917185.1 DUF805 domain-containing protein -
  IL310_RS06325 (IL310_06330) - 814133..814288 (-) 156 WP_014572174.1 hypothetical protein -
  IL310_RS06330 (IL310_06335) - 814409..814678 (-) 270 WP_139917182.1 DUF3892 domain-containing protein -
  IL310_RS06335 (IL310_06340) - 814795..815184 (+) 390 WP_139917180.1 DUF722 domain-containing protein -
  IL310_RS06340 (IL310_06345) - 815465..816160 (+) 696 WP_139917178.1 M23 family metallopeptidase -
  IL310_RS06345 (IL310_06350) - 816304..816756 (+) 453 WP_201248188.1 terminase small subunit -
  IL310_RS06350 (IL310_06355) - 816749..818032 (+) 1284 WP_201248187.1 PBSX family phage terminase large subunit -
  IL310_RS06355 (IL310_06360) - 818042..818632 (+) 591 Protein_835 phage portal protein -
  IL310_RS06360 (IL310_06365) - 818631..819149 (+) 519 Protein_836 phage tail protein -
  IL310_RS06365 (IL310_06370) - 819343..819480 (+) 138 WP_180350340.1 hypothetical protein -
  IL310_RS06370 (IL310_06375) - 819480..820574 (+) 1095 WP_201248222.1 pyocin knob domain-containing protein -
  IL310_RS06375 (IL310_06380) - 820595..820816 (+) 222 WP_058204022.1 hemolysin XhlA family protein -
  IL310_RS06380 (IL310_06385) - 820829..821104 (+) 276 WP_058204825.1 holin -
  IL310_RS06385 (IL310_06390) - 821104..821883 (+) 780 WP_201248186.1 peptidoglycan amidohydrolase family protein -
  IL310_RS06390 (IL310_06395) - 821966..822496 (+) 531 WP_075070535.1 hypothetical protein -
  IL310_RS06395 (IL310_06400) - 822617..823138 (+) 522 WP_242481486.1 hypothetical protein -
  IL310_RS06400 (IL310_06405) - 823063..823542 (+) 480 WP_242481485.1 peptidyl-prolyl cis-trans isomerase -
  IL310_RS06405 (IL310_06410) - 823657..823932 (+) 276 WP_098393408.1 DUF2089 family protein -
  IL310_RS06410 (IL310_06415) - 823925..824218 (+) 294 WP_081213653.1 hypothetical protein -
  IL310_RS06415 (IL310_06420) - 824635..825006 (-) 372 WP_058203533.1 membrane lipoprotein lipid attachment site-containing protein -
  IL310_RS06420 (IL310_06425) - 826255..826503 (-) 249 WP_058204319.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  IL310_RS06425 (IL310_06430) - 826824..827093 (+) 270 WP_103054918.1 hypothetical protein -
  IL310_RS06430 (IL310_06435) - 827407..828105 (-) 699 WP_058203057.1 hypothetical protein -
  IL310_RS06435 (IL310_06440) - 828412..829248 (+) 837 WP_201248185.1 metallophosphoesterase -
  IL310_RS06440 (IL310_06445) - 829361..830272 (+) 912 WP_058223280.1 CHAP domain-containing protein -
  IL310_RS06445 (IL310_06450) - 830498..830860 (+) 363 WP_201248184.1 TIGR02328 family protein -
  IL310_RS06450 (IL310_06455) - 830942..831406 (+) 465 WP_021722679.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15794.56 Da        Isoelectric Point: 5.1972

>NTDB_id=784639 IL310_RS06295 WP_139917197.1 810659..811084(+) (ssb) [Lactococcus lactis strain LB7]
MINNVTLVGRIAKEPELRYTQQNKAVASFTLAVNRQFKNFNGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYIMEVVASNFQVLEKSNQANGERVGNPAAKPQNNDSFGSDPMEISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=784639 IL310_RS06295 WP_139917197.1 810659..811084(+) (ssb) [Lactococcus lactis strain LB7]
ATGATTAACAATGTCACTCTAGTAGGGCGAATCGCTAAGGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTTCAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGTAGTATTCAAACTCGC
AACTATGAGAATCAACAAGGGCAACGAGTTTATATTATGGAGGTTGTCGCAAGTAATTTCCAAGTACTTGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.61
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.553

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

42.553

100

0.426
  ssbB/cilA Streptococcus mitis SK321

42.553

100

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

41.844

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

41.844

100

0.418
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

41.844

100

0.418
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.808

73.759

0.404
  ssbA Streptococcus mutans UA159

38.298

100

0.383