Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PQV96_RS16495 Genome accession   NZ_CP117193
Coordinates   3529212..3530429 (+) Length   405 a.a.
NCBI ID   WP_273623613.1    Uniprot ID   -
Organism   Acidovorax temperans strain LMJ     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3524212..3535429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQV96_RS16480 (PQV96_16480) - 3524886..3526002 (+) 1117 Protein_3238 IS5 family transposase -
  PQV96_RS16485 (PQV96_16485) pilB 3526387..3528120 (+) 1734 WP_273623611.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PQV96_RS16490 (PQV96_16490) - 3528186..3529136 (-) 951 WP_031635932.1 IS30 family transposase -
  PQV96_RS16495 (PQV96_16495) pilC 3529212..3530429 (+) 1218 WP_273623613.1 type II secretion system F family protein Machinery gene
  PQV96_RS16500 (PQV96_16500) pilD 3530429..3531313 (+) 885 WP_273623614.1 prepilin peptidase Machinery gene
  PQV96_RS16505 (PQV96_16505) coaE 3531314..3531928 (+) 615 WP_207374137.1 dephospho-CoA kinase -
  PQV96_RS16510 (PQV96_16510) zapD 3532018..3532773 (+) 756 WP_066783621.1 cell division protein ZapD -
  PQV96_RS16515 (PQV96_16515) - 3532816..3533049 (+) 234 WP_207374138.1 DNA gyrase inhibitor YacG -
  PQV96_RS16520 (PQV96_16520) mutT 3533113..3533520 (-) 408 WP_207374139.1 8-oxo-dGTP diphosphatase MutT -
  PQV96_RS16525 (PQV96_16525) - 3533566..3534432 (-) 867 WP_207374140.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44699.65 Da        Isoelectric Point: 9.5480

>NTDB_id=782701 PQV96_RS16495 WP_273623613.1 3529212..3530429(+) (pilC) [Acidovorax temperans strain LMJ]
MLRFVLESAKEFVFEWEGKDRAGKVVRGEIRAVGENQVQATLRRQGVFPTKIKKRRTRSGKKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRSDVETGTSLNAAFRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPASVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGISEVFVKWWWLIFSVIGGGFYFFF
QAWKRNEKMQKFMDRFLLKMPIFGALIDKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNSVYATATEKIQQEVSTGT
SLTVAMDNAKIFPSMVIQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGSLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=782701 PQV96_RS16495 WP_273623613.1 3529212..3530429(+) (pilC) [Acidovorax temperans strain LMJ]
TTGTTGCGCTTCGTACTTGAATCCGCCAAGGAATTTGTCTTTGAATGGGAGGGAAAAGATCGTGCAGGTAAAGTGGTGCG
CGGAGAAATCCGTGCTGTAGGGGAAAATCAAGTCCAAGCGACGCTTCGCCGTCAAGGGGTTTTCCCCACAAAAATAAAGA
AGCGGCGCACCCGCTCTGGGAAAAAGATCAAGCCCAAAGACATAGCGCTTTTCACTCGACAGCTGGCAACAATGATGAAA
GCTGGGGTTCCCTTGCTTCAGTCTTTTGACATCGTTGGTCGAGGAAATACAAACGCAAGCGTTACAAAGCTTCTTAATGA
CATTCGCTCGGATGTTGAAACAGGAACATCTTTGAACGCAGCGTTTCGCAAGCACCCCATGTATTTTGATAGTCTCTATT
GTAATCTAGTAGAGGCGGGAGAGGCCGCAGGTATTTTAGAAGCATTACTTGATCGTCTGGCCACCTATATGGAGAAAACG
GAGGCGATTAAATCGAAAATCAAATCGGCTCTTATGTATCCAGCTTCCGTCATCATTGTTGCTTTTGTAGTCGTAACAGT
GATCATGATATTTGTTATTCCAGCATTCAAAGAGGTATTTACCTCTTTTGGAGCCGACCTACCCGCACCCACACTTTTCG
TGATGGGAATCAGCGAAGTTTTCGTAAAATGGTGGTGGCTCATTTTTTCAGTAATTGGCGGTGGATTTTATTTTTTCTTT
CAAGCATGGAAAAGAAATGAAAAAATGCAGAAATTCATGGATCGATTCTTGTTGAAAATGCCTATTTTTGGTGCACTGAT
CGATAAATCTTGTGTTGCACGATGGACACGTACATTGGCGACCATGTTTGCAGCGGGCGTTCCACTAGTCGAAGCACTGG
ATTCGGTAGGAGGAGCTTCAGGCAACTCCGTCTACGCAACTGCGACAGAAAAAATTCAACAGGAAGTATCTACAGGCACC
AGCCTCACCGTAGCTATGGACAACGCGAAGATATTTCCGTCGATGGTCATTCAAATGTGTGCTATCGGTGAAGAGTCCGG
ATCCATTGATCATATGCTGGGGAAGGCTGCTGATTTTTACGAAGCGGAAGTTGACGAGATGGTTGCAGGCCTCTCCAGCC
TGATGGAACCCATCATTATTGTTTTTCTCGGCTCTTTGATTGGCGGAATCGTAGTCTCCATGTATCTCCCCATTTTCAAA
TTGGGTCAGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.386

98.519

0.536
  pilG Neisseria gonorrhoeae MS11

52.357

99.506

0.521
  pilG Neisseria meningitidis 44/76-A

52.109

99.506

0.519
  pilC Acinetobacter baylyi ADP1

49.749

98.272

0.489
  pilC Legionella pneumophila strain ERS1305867

49.497

98.272

0.486
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.25

98.765

0.388
  pilC Thermus thermophilus HB27

37.469

99.506

0.373