Detailed information NTG0782702

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PQV96_RS16500
• Genome accession: NZ_CP117193
• Coordinates: 3530429..3531313 (+)
• Length: 294 a.a.
• NCBI ID: WP_273623614.1
• Uniprot ID: -
• Organism: Acidovorax temperans strain LMJ
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3525429..3536313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQV96_RS16485 (PQV96_16485)	pilB	3526387..3528120 (+)	1734	WP_273623611.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PQV96_RS16490 (PQV96_16490)	-	3528186..3529136 (-)	951	WP_031635932.1	IS30 family transposase	-
PQV96_RS16495 (PQV96_16495)	pilC	3529212..3530429 (+)	1218	WP_273623613.1	type II secretion system F family protein	Machinery gene
PQV96_RS16500 (PQV96_16500)	pilD	3530429..3531313 (+)	885	WP_273623614.1	prepilin peptidase	Machinery gene
PQV96_RS16505 (PQV96_16505)	coaE	3531314..3531928 (+)	615	WP_207374137.1	dephospho-CoA kinase	-
PQV96_RS16510 (PQV96_16510)	zapD	3532018..3532773 (+)	756	WP_066783621.1	cell division protein ZapD	-
PQV96_RS16515 (PQV96_16515)	-	3532816..3533049 (+)	234	WP_207374138.1	DNA gyrase inhibitor YacG	-
PQV96_RS16520 (PQV96_16520)	mutT	3533113..3533520 (-)	408	WP_207374139.1	8-oxo-dGTP diphosphatase MutT	-
PQV96_RS16525 (PQV96_16525)	-	3533566..3534432 (-)	867	WP_207374140.1	ATP-binding protein	-
PQV96_RS16530 (PQV96_16530)	argJ	3534488..3535717 (-)	1230	WP_207374141.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31783.65 Da
• Isoelectric Point: 6.4467

>NTDB_id=782702 PQV96_RS16500 WP_273623614.1 3530429..3531313(+) (pilD) [Acidovorax temperans strain LMJ]
MDFAVLPAAGLAGLLGLLIGSFLNVVIYRLPKMMERQWAAEITAYQAEKENTPSKIEEPSPAEAPFNLMVPRSACPACGH
QVAWYENIPVISYLFLRGKCSGCATRISARYPLVELLTGALFFFCVHRWGPTPTGLAWCGFSAVLIALAFIDWDTTLLPD
DLTLPLLWAGVVAAALQWIQVPLFSSVMGAVAGYLSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWEALVPIILMS
SVIGAIVGIGLKVFSSLREGGYIPFGPFLVGAGLTAMIASPKVMMDTVLRTFGL

Nucleotide

• Length: 885 bp

>NTDB_id=782702 PQV96_RS16500 WP_273623614.1 3530429..3531313(+) (pilD) [Acidovorax temperans strain LMJ]
ATGGATTTCGCTGTGTTGCCAGCCGCTGGGTTGGCGGGTTTGCTGGGATTGCTTATTGGTAGTTTTCTGAATGTGGTGAT
TTACCGATTGCCCAAGATGATGGAACGTCAATGGGCGGCGGAAATTACCGCTTATCAGGCAGAAAAAGAGAACACACCAT
CAAAGATAGAAGAGCCGTCCCCCGCGGAAGCGCCCTTCAATCTCATGGTTCCTCGGTCAGCGTGTCCGGCATGCGGGCAT
CAGGTCGCTTGGTACGAAAACATCCCTGTCATCAGTTACCTGTTTCTACGCGGTAAGTGTTCAGGTTGCGCGACGCGGAT
CAGTGCGCGGTATCCGCTGGTGGAACTTTTGACCGGAGCACTTTTCTTTTTTTGCGTGCATCGCTGGGGCCCCACCCCCA
CAGGATTGGCGTGGTGTGGTTTTTCAGCGGTTTTGATTGCGCTTGCTTTCATTGATTGGGACACCACGCTGCTGCCTGAT
GATTTGACCTTGCCACTCTTGTGGGCGGGGGTGGTGGCTGCCGCATTGCAGTGGATTCAGGTGCCTTTGTTCTCGTCCGT
GATGGGAGCTGTGGCTGGCTACCTGTCCTTGTGGCTTGTCTATTGGGGCTTCAAGCTGGCCACGGGCAAGGAGGGGATGG
GGTACGGCGATTTCAAACTATTTGCCGCCTTGGGCGCCTGGTTTGGCTGGGAAGCCTTGGTCCCGATCATCCTGATGTCC
TCAGTGATTGGGGCGATTGTCGGTATTGGACTCAAAGTTTTCAGCAGCTTGCGCGAGGGGGGCTACATTCCTTTCGGGCC
GTTCCTGGTAGGTGCTGGGCTGACCGCAATGATCGCTAGCCCCAAGGTGATGATGGATACGGTGTTGCGGACGTTTGGGC
TGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-249)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.812	93.878	0.486
pilD	Vibrio campbellii strain DS40M4	51.636	93.537	0.483
pilD	Neisseria gonorrhoeae MS11	48.944	96.599	0.473
pilD	Acinetobacter baumannii D1279779	46.715	93.197	0.435
pilD	Acinetobacter nosocomialis M2	45.985	93.197	0.429