Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M0P24_RS09930 Genome accession   NZ_CP116957
Coordinates   1966134..1966529 (-) Length   131 a.a.
NCBI ID   WP_013851404.1    Uniprot ID   A0AAW6YLG6
Organism   Streptococcus pasteurianus strain WUSP070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1966706..1968439 1966134..1966529 flank 177


Gene organization within MGE regions


Location: 1966134..1968439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS09930 (M0P24_09930) ssbA 1966134..1966529 (-) 396 WP_013851404.1 single-stranded DNA-binding protein Machinery gene
  M0P24_RS09935 (M0P24_09935) - 1966712..1968439 (+) 1728 WP_274501162.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14891.89 Da        Isoelectric Point: 5.7916

>NTDB_id=781642 M0P24_RS09930 WP_013851404.1 1966134..1966529(-) (ssbA) [Streptococcus pasteurianus strain WUSP070]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGEREADFISIVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=781642 M0P24_RS09930 WP_013851404.1 1966134..1966529(-) (ssbA) [Streptococcus pasteurianus strain WUSP070]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACGGCGCAGCCTGAGCTTGTGACGACGTCAAATGAGAAATCTGTTAC
ACGTGTAACATTAGCAGTTAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTTATTTCAATTGTGGTTT
GGGGACGTTTAGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCTATGCGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405