Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QZN16_RS05270 Genome accession   NZ_CP129876
Coordinates   1008358..1009428 (-) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae strain NEM316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003358..1014428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN16_RS05250 - 1003893..1004645 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  QZN16_RS05255 - 1004647..1006602 (+) 1956 WP_000499555.1 FtsX-like permease family protein -
  QZN16_RS05260 braR 1006712..1007380 (+) 669 WP_000076365.1 response regulator transcription factor Regulator
  QZN16_RS05265 - 1007377..1008315 (+) 939 WP_000620983.1 sensor histidine kinase -
  QZN16_RS05270 xerS 1008358..1009428 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  QZN16_RS05275 - 1009881..1011476 (+) 1596 WP_000093958.1 peptide ABC transporter substrate-binding protein -
  QZN16_RS05280 - 1011509..1012282 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  QZN16_RS05285 - 1012272..1012958 (-) 687 WP_000280305.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=781107 QZN16_RS05270 WP_000817930.1 1008358..1009428(-) (xerS) [Streptococcus agalactiae strain NEM316]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=781107 QZN16_RS05270 WP_000817930.1 1008358..1009428(-) (xerS) [Streptococcus agalactiae strain NEM316]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATACTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAAAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837