Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QZN16_RS05260 Genome accession   NZ_CP129876
Coordinates   1006712..1007380 (+) Length   222 a.a.
NCBI ID   WP_000076365.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NEM316     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001712..1012380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN16_RS05240 - 1002252..1002740 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  QZN16_RS05245 - 1002906..1003867 (+) 962 Protein_954 S41 family peptidase -
  QZN16_RS05250 - 1003893..1004645 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  QZN16_RS05255 - 1004647..1006602 (+) 1956 WP_000499555.1 FtsX-like permease family protein -
  QZN16_RS05260 braR 1006712..1007380 (+) 669 WP_000076365.1 response regulator transcription factor Regulator
  QZN16_RS05265 - 1007377..1008315 (+) 939 WP_000620983.1 sensor histidine kinase -
  QZN16_RS05270 xerS 1008358..1009428 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  QZN16_RS05275 - 1009881..1011476 (+) 1596 WP_000093958.1 peptide ABC transporter substrate-binding protein -
  QZN16_RS05280 - 1011509..1012282 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25331.39 Da        Isoelectric Point: 5.3008

>NTDB_id=781106 QZN16_RS05260 WP_000076365.1 1006712..1007380(+) (braR) [Streptococcus agalactiae strain NEM316]
MSQDQGKIYIVEDDMTIVSLLKGHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=781106 QZN16_RS05260 WP_000076365.1 1006712..1007380(+) (braR) [Streptococcus agalactiae strain NEM316]
ATGTCACAAGATCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGGCCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGAG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAGGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.198

0.464