Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QY075_RS19725 Genome accession   NZ_CP129688
Coordinates   4183559..4184647 (-) Length   362 a.a.
NCBI ID   WP_301755440.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA2818     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4178559..4189647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS19700 - 4178887..4179873 (-) 987 WP_019484350.1 phospholipase -
  QY075_RS19705 aroE 4179984..4180808 (-) 825 WP_003097314.1 shikimate dehydrogenase -
  QY075_RS19710 hemF 4180866..4181783 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QY075_RS19715 - 4181974..4182951 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  QY075_RS19720 - 4182961..4183518 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  QY075_RS19725 dprA 4183559..4184647 (-) 1089 WP_301755440.1 DNA-processing protein DprA Machinery gene
  QY075_RS19730 tsaP 4184782..4185807 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QY075_RS19735 def 4185946..4186452 (+) 507 WP_003097293.1 peptide deformylase -
  QY075_RS19740 fmt 4186507..4187451 (+) 945 WP_019485169.1 methionyl-tRNA formyltransferase -
  QY075_RS19745 rsmB 4187448..4188752 (+) 1305 WP_003131368.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37729.28 Da        Isoelectric Point: 7.0742

>NTDB_id=780887 QY075_RS19725 WP_301755440.1 4183559..4184647(-) (dprA) [Pseudomonas aeruginosa strain PA2818]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLVAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=780887 QY075_RS19725 WP_301755440.1 4183559..4184647(-) (dprA) [Pseudomonas aeruginosa strain PA2818]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTATACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGTTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGTCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.535

83.702

0.39
  dprA Vibrio cholerae strain A1552

46.535

83.702

0.39
  dprA Acinetobacter baumannii D1279779

37.845

100

0.378
  dprA Acinetobacter baumannii strain A118

38.462

96.961

0.373
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367