Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PHA78_RS00900 Genome accession   NZ_CP116604
Coordinates   153901..154296 (+) Length   131 a.a.
NCBI ID   WP_014637328.1    Uniprot ID   G7SD76
Organism   Streptococcus sp. HN38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148901..159296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS00865 pepA 149140..150201 (-) 1062 WP_029184956.1 glutamyl aminopeptidase -
  PHA78_RS00870 - 150333..150437 (+) 105 WP_125175873.1 type I toxin-antitoxin system Fst family toxin -
  PHA78_RS00875 - 150637..150921 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  PHA78_RS00880 - 150918..151238 (+) 321 WP_272158328.1 thioredoxin family protein -
  PHA78_RS00885 - 151436..152392 (+) 957 WP_272158329.1 DUF1002 domain-containing protein -
  PHA78_RS00890 - 152411..153034 (+) 624 WP_029178036.1 DUF4479 and tRNA-binding domain-containing protein -
  PHA78_RS00895 - 153067..153846 (-) 780 WP_272158330.1 DUF2785 domain-containing protein -
  PHA78_RS00900 ssbA 153901..154296 (+) 396 WP_014637328.1 single-stranded DNA-binding protein Machinery gene
  PHA78_RS00905 - 154650..154811 (-) 162 WP_153958514.1 hypothetical protein -
  PHA78_RS00910 groES 155009..155290 (+) 282 WP_014637330.1 co-chaperone GroES -
  PHA78_RS00915 groL 155301..156923 (+) 1623 WP_272158332.1 chaperonin GroEL -
  PHA78_RS00920 rpsL 157155..157568 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  PHA78_RS00925 rpsG 157585..158055 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14866.76 Da        Isoelectric Point: 5.0026

>NTDB_id=778750 PHA78_RS00900 WP_014637328.1 153901..154296(+) (ssbA) [Streptococcus sp. HN38]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=778750 PHA78_RS00900 WP_014637328.1 153901..154296(+) (ssbA) [Streptococcus sp. HN38]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAACGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAGACACTTGTTTCTTATGGTAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAATAACACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SD76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382