Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PJW05_RS05520 Genome accession   NZ_CP116304
Coordinates   1194846..1196063 (-) Length   405 a.a.
NCBI ID   WP_271410728.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189846..1201063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS05480 - 1190226..1190399 (-) 174 WP_151131884.1 DUF3094 family protein -
  PJW05_RS05485 - 1190488..1191114 (-) 627 WP_271410722.1 DUF1780 domain-containing protein -
  PJW05_RS05490 - 1191237..1191659 (+) 423 WP_271410723.1 GNAT family N-acetyltransferase -
  PJW05_RS05495 - 1191664..1192131 (+) 468 WP_271410724.1 FAD/FMN-containing dehydrogenase -
  PJW05_RS05500 - 1192128..1192817 (+) 690 WP_271410725.1 energy-coupling factor ABC transporter permease -
  PJW05_RS05505 yacG 1193166..1193366 (-) 201 WP_151131890.1 DNA gyrase inhibitor YacG -
  PJW05_RS05510 coaE 1193363..1193974 (-) 612 WP_271410726.1 dephospho-CoA kinase -
  PJW05_RS05515 pilD 1193971..1194843 (-) 873 WP_271410727.1 A24 family peptidase Machinery gene
  PJW05_RS05520 pilC 1194846..1196063 (-) 1218 WP_271410728.1 type II secretion system F family protein Machinery gene
  PJW05_RS05525 pilB 1196066..1197772 (-) 1707 WP_271410729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJW05_RS05530 - 1198059..1198535 (+) 477 WP_271410730.1 pilin -
  PJW05_RS05535 - 1198606..1200270 (+) 1665 WP_271410731.1 O-antigen ligase family protein -
  PJW05_RS05545 - 1200447..1200674 (-) 228 WP_271410732.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43882.70 Da        Isoelectric Point: 9.7687

>NTDB_id=776504 PJW05_RS05520 WP_271410728.1 1194846..1196063(-) (pilC) [Pseudomonas sp. Q1-7]
MAEKALKTSTFAWEGTDKKGSKVKGELTGATPALVKAQLRKQGINPTRVRKKSSSLLGAGKKIKPLDIALFTRQMATMMK
AGVPLMQSFDIIGEGFEKPAMRTLVNEVKQEVAAGNSLANSLRKKPLYFDELYCNLVDSGEQAGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVVVAIIVSAILLIKVVPQFQSVFANFGAELPAFTLMVIGLSELLQEWWFFVLLGFFAIGFAIQ
QAHRKSEKFRDWVDHTVLKLPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGASGNVVFKNAVLKIKQDVSTGM
QLNFSMRTTGVFPAMATQMTAIGEESGALDEMLDKVASFYEAEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=776504 PJW05_RS05520 WP_271410728.1 1194846..1196063(-) (pilC) [Pseudomonas sp. Q1-7]
ATGGCGGAAAAAGCGCTGAAAACCAGTACCTTCGCCTGGGAAGGTACGGACAAGAAAGGCTCGAAGGTCAAGGGCGAGTT
GACCGGAGCGACTCCGGCGCTGGTCAAGGCCCAACTGCGCAAGCAGGGCATCAACCCGACCCGGGTGCGCAAGAAGTCCA
GTTCACTGCTGGGGGCAGGTAAGAAGATCAAGCCCCTGGACATCGCTCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGATGCAGTCCTTCGACATCATCGGCGAGGGTTTCGAGAAACCCGCCATGCGCACGCTGGTGAACGA
GGTCAAGCAGGAGGTGGCCGCCGGTAACAGCCTGGCCAATTCCCTGCGCAAGAAACCGCTCTATTTTGACGAGCTCTATT
GCAACCTGGTGGACTCCGGCGAACAGGCTGGCGCACTGGAAACCCTGCTGGACCGTGTCGCCACCTACAAGGAGAAGACC
GAAGCCCTGAAGGCCAAGATCAAGAAGGCGATGAACTACCCGATTGCCGTAGTTGTGGTCGCCATCATCGTGTCAGCCAT
CCTGCTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGCCAATTTTGGCGCTGAGCTCCCCGCCTTTACCCTGATGG
TTATTGGGCTTTCGGAGCTCCTGCAGGAATGGTGGTTTTTTGTCCTGCTGGGGTTCTTCGCCATCGGTTTTGCGATTCAG
CAGGCGCACCGGAAATCGGAAAAATTCCGCGACTGGGTCGACCACACCGTGCTCAAGCTGCCGGTTGTCGGCGACATCCT
GTACAAGTCCGCTGTGGCGCGCTTCGCCCGCACCCTCGCCACCACCTTCGCGGCGGGCGTTCCGCTGGTGGATGCGCTGG
ACTCCGTTGCCGGCGCGAGCGGCAACGTGGTGTTCAAGAATGCCGTACTGAAGATCAAGCAGGATGTGTCCACCGGCATG
CAACTGAACTTCTCCATGCGCACCACGGGCGTTTTCCCGGCCATGGCCACCCAGATGACCGCCATCGGCGAAGAATCCGG
CGCGCTGGACGAGATGCTGGACAAGGTCGCCAGCTTCTACGAAGCGGAAGTGGATAACGCCGTCGACGGTCTCACTGCGC
TGATGGAACCCATGATCATGGCCGTGCTCGGCGTGCTGGTGGGTGGCCTGATCATCGCCATGTACCTGCCCATCTTCCAA
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.481

100

0.815
  pilC Acinetobacter baylyi ADP1

60.391

100

0.61
  pilC Acinetobacter baumannii D1279779

60.494

100

0.605
  pilC Legionella pneumophila strain ERS1305867

52.645

98.025

0.516
  pilG Neisseria gonorrhoeae MS11

46.173

100

0.462
  pilG Neisseria meningitidis 44/76-A

46.059

100

0.462
  pilC Vibrio cholerae strain A1552

41.235

100

0.412
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

37.5

98.765

0.37