Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PJW05_RS05515 Genome accession   NZ_CP116304
Coordinates   1193971..1194843 (-) Length   290 a.a.
NCBI ID   WP_271410727.1    Uniprot ID   -
Organism   Pseudomonas sp. Q1-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188971..1199843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW05_RS05480 - 1190226..1190399 (-) 174 WP_151131884.1 DUF3094 family protein -
  PJW05_RS05485 - 1190488..1191114 (-) 627 WP_271410722.1 DUF1780 domain-containing protein -
  PJW05_RS05490 - 1191237..1191659 (+) 423 WP_271410723.1 GNAT family N-acetyltransferase -
  PJW05_RS05495 - 1191664..1192131 (+) 468 WP_271410724.1 FAD/FMN-containing dehydrogenase -
  PJW05_RS05500 - 1192128..1192817 (+) 690 WP_271410725.1 energy-coupling factor ABC transporter permease -
  PJW05_RS05505 yacG 1193166..1193366 (-) 201 WP_151131890.1 DNA gyrase inhibitor YacG -
  PJW05_RS05510 coaE 1193363..1193974 (-) 612 WP_271410726.1 dephospho-CoA kinase -
  PJW05_RS05515 pilD 1193971..1194843 (-) 873 WP_271410727.1 A24 family peptidase Machinery gene
  PJW05_RS05520 pilC 1194846..1196063 (-) 1218 WP_271410728.1 type II secretion system F family protein Machinery gene
  PJW05_RS05525 pilB 1196066..1197772 (-) 1707 WP_271410729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJW05_RS05530 - 1198059..1198535 (+) 477 WP_271410730.1 pilin -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31876.88 Da        Isoelectric Point: 7.0083

>NTDB_id=776503 PJW05_RS05515 WP_271410727.1 1193971..1194843(-) (pilD) [Pseudomonas sp. Q1-7]
MQLIDFLASHALAFVLCALVLGLLVGSFLNVVIHRLPQMMLRDWQEQAREALSLPAEPKGPAFNLILPNSRCPHCSHEIR
AWENIPLVSYLALGGKCSSCKAPISKRYPLVELFCGLLSAYVAWQFGFGWQAGAFLVLTWGLLAMSLIDVDHQLLPDVLV
LPLLWLGLILNSQGLFASLEDALWGAVAGYMSLWSVYWLFKLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVIMLRLRNQDTATPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=776503 PJW05_RS05515 WP_271410727.1 1193971..1194843(-) (pilD) [Pseudomonas sp. Q1-7]
ATGCAATTGATCGACTTTCTGGCCAGCCATGCGCTGGCCTTTGTTTTGTGCGCTCTGGTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAATGTGGTGATCCATCGCCTGCCGCAGATGATGCTGCGCGACTGGCAGGAGCAGGCCCGCGAGGCACTGAGCC
TGCCGGCGGAGCCCAAGGGGCCGGCGTTCAACCTGATCCTGCCGAATTCCCGCTGCCCCCATTGCAGCCATGAAATCCGC
GCCTGGGAGAATATTCCGCTGGTGAGCTACCTGGCGCTGGGCGGCAAATGCTCTTCCTGCAAAGCCCCGATCAGCAAACG
CTACCCGCTGGTGGAGTTGTTCTGCGGCCTGCTGTCGGCCTATGTGGCCTGGCAGTTCGGTTTCGGCTGGCAGGCCGGTG
CCTTCCTGGTGCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGTCGACCACCAGCTGCTGCCGGATGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCCTCAATAGCCAGGGGCTGTTCGCCAGCCTGGAAGATGCGCTCTGGGGCGCGGT
CGCCGGCTACATGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACGGGCAAGGAGGGCATGGGCCACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGATCCTTGGTGTGATCATGCTGCGTCTGCGCAACCAGGACACCGCCACACCCATCCCGTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCACTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAGTTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.797

95.172

0.531
  pilD Vibrio campbellii strain DS40M4

52.747

94.138

0.497
  pilD Acinetobacter nosocomialis M2

50.175

98.276

0.493
  pilD Acinetobacter baumannii D1279779

49.825

98.276

0.49
  pilD Neisseria gonorrhoeae MS11

51.711

90.69

0.469