Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PGW89_RS06560 Genome accession   NZ_CP116040
Coordinates   1401086..1402312 (+) Length   408 a.a.
NCBI ID   WP_113997817.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396086..1407312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS06525 (PGW89_06525) rimP 1396676..1397200 (-) 525 WP_005083847.1 ribosome maturation factor RimP -
  PGW89_RS06545 (PGW89_06545) secG 1397836..1398165 (-) 330 WP_004637686.1 preprotein translocase subunit SecG -
  PGW89_RS06550 (PGW89_06550) tpiA 1398178..1398969 (-) 792 WP_005088004.1 triose-phosphate isomerase -
  PGW89_RS06555 (PGW89_06555) pilB 1399346..1401061 (+) 1716 WP_005083851.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PGW89_RS06560 (PGW89_06560) pilC 1401086..1402312 (+) 1227 WP_113997817.1 type II secretion system F family protein Machinery gene
  PGW89_RS06565 (PGW89_06565) pilD 1402312..1403172 (+) 861 WP_113997818.1 A24 family peptidase Machinery gene
  PGW89_RS06570 (PGW89_06570) coaE 1403174..1403779 (+) 606 WP_113997819.1 dephospho-CoA kinase -
  PGW89_RS06575 (PGW89_06575) - 1403776..1404687 (-) 912 WP_113997820.1 DMT family transporter -
  PGW89_RS06580 (PGW89_06580) rlmB 1404727..1405473 (-) 747 WP_004637678.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PGW89_RS06585 (PGW89_06585) - 1405581..1405907 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44937.35 Da        Isoelectric Point: 9.8565

>NTDB_id=775486 PGW89_RS06560 WP_113997817.1 1401086..1402312(+) (pilC) [Acinetobacter haemolyticus strain HW-2]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSMWMQEYWFILIIVVGAIIA
SFLEAKKRSKKFRDTLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRASNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=775486 PGW89_RS06560 WP_113997817.1 1401086..1402312(+) (pilC) [Acinetobacter haemolyticus strain HW-2]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTACGAAGGGGTAGATCGCAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTAGCCAAAGTCACATTACGCAAACAAGGGGTAACGATTAAGAACATTCGAGAAAAAC
GCAAAAACATTCTTGAAGGTTTGATGAAGAAGAAAGTCACCACCCTTGATATCACGGTATTTACACGCCAACTGGCAACC
ATGATGAAAGCTGGCGTCCCACTCGTGCAAGGCTTTGAAATCGTGGCTGAAGGTTTAGAGAATCCATCGATGCGGGAAGT
GGTGCTTGGACTCAAAGGCGAAGTTGAAGGCGGGAATACCTTTGCGGGCGCATTAAGAAAATACCCACAATACTTTGACA
ACCTCTTTTGCTCTTTAGTTGAATCTGGTGAACAATCTGGTGCACTAGAAACCATGCTAGATCGCGTCGCGATTTATAAA
GAGAAAAGTGAGTTACTCAAACAAAAAATCAAAAAAGCCATGAAATATCCTGCGACAGTTATCGTGGTTGCAGTGATTGT
CACCATTATTTTGATGGTTAAGGTGGTTCCTGTGTTCCAAGATTTATTTAGCTCATTTGGTGCAGACTTACCTGCCTTTA
CCAAAATGGTCGTGAATATGTCGATGTGGATGCAAGAGTATTGGTTCATTTTAATTATTGTTGTCGGTGCAATTATTGCC
AGTTTTCTTGAGGCAAAAAAACGTAGTAAAAAGTTCCGTGACACTCTTGATAAACTTGCATTACGCTTACCGATTTTTGG
TGATTTGGTTTATAAAGCCATTATTGCGCGTTATAGTCGTACACTTGCAACAACATTTGCAGCAGGGGTTCCATTGATTG
ATGCGCTCGAATCAACGGCTGGTGCAACCAATAACGTTGTTTATGAAGAAGCCGTGATGAAAATTCGTGAAGATGTTGCT
ACAGGACAACAGTTACAATTTGCTATGCGCGCTTCTAACCGTTTTCCATCAATGGCGATTCAAATGGTTGCGATTGGTGA
AGAGTCCGGTGCTTTAGATAGCATGCTAGATAAAGTTGCCACTCACTTTGAAAATGAAGTCGATAATGCCGTTGATGGCT
TAACCTCAATGATGGAACCGTTAATTATGGCGATTCTAGGAGTACTTGTGGGTGGTCTTGTTATCGCGATGTACCTTCCA
ATTTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.892

100

0.929
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

61.179

99.755

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

41.278

99.755

0.412
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

36.908

98.284

0.363