Detailed information NTG0775487

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PGW89_RS06565
• Genome accession: NZ_CP116040
• Coordinates: 1402312..1403172 (+)
• Length: 286 a.a.
• NCBI ID: WP_113997818.1
• Uniprot ID: -
• Organism: Acinetobacter haemolyticus strain HW-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1397312..1408172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGW89_RS06545 (PGW89_06545)	secG	1397836..1398165 (-)	330	WP_004637686.1	preprotein translocase subunit SecG	-
PGW89_RS06550 (PGW89_06550)	tpiA	1398178..1398969 (-)	792	WP_005088004.1	triose-phosphate isomerase	-
PGW89_RS06555 (PGW89_06555)	pilB	1399346..1401061 (+)	1716	WP_005083851.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PGW89_RS06560 (PGW89_06560)	pilC	1401086..1402312 (+)	1227	WP_113997817.1	type II secretion system F family protein	Machinery gene
PGW89_RS06565 (PGW89_06565)	pilD	1402312..1403172 (+)	861	WP_113997818.1	A24 family peptidase	Machinery gene
PGW89_RS06570 (PGW89_06570)	coaE	1403174..1403779 (+)	606	WP_113997819.1	dephospho-CoA kinase	-
PGW89_RS06575 (PGW89_06575)	-	1403776..1404687 (-)	912	WP_113997820.1	DMT family transporter	-
PGW89_RS06580 (PGW89_06580)	rlmB	1404727..1405473 (-)	747	WP_004637678.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PGW89_RS06585 (PGW89_06585)	-	1405581..1405907 (-)	327	WP_004637677.1	pyrimidine/purine nucleoside phosphorylase	-
PGW89_RS06590 (PGW89_06590)	recN	1406241..1407902 (+)	1662	WP_113997821.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32062.37 Da
• Isoelectric Point: 6.4294

>NTDB_id=775487 PGW89_RS06565 WP_113997818.1 1402312..1403172(+) (pilD) [Acinetobacter haemolyticus strain HW-2]
MQQFLNYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQILLHPEQPIIEEEKLTLSQPASTCPKCHTP
IRWYQNIPVISWLVLRGKCAACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSV
VGAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=775487 PGW89_RS06565 WP_113997818.1 1402312..1403172(+) (pilD) [Acinetobacter haemolyticus strain HW-2]
ATGCAGCAATTCTTAAATTATTTTATCGAAAACCCAACTGCACTTTATCTAGCAGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAGAATGATGGAGCAGGAATGGCAACAAGAATGCCAAATACTACTCC
ATCCAGAACAACCTATCATTGAAGAAGAAAAGCTGACTTTAAGTCAACCGGCATCAACTTGCCCAAAGTGCCACACCCCT
ATCCGCTGGTATCAAAATATCCCAGTGATCAGCTGGTTAGTACTCCGTGGTAAATGCGCTGCCTGTCAAAACCCGATTAG
TATTCGTTACCCATTGATCGAGTTATTGACCATGGGATGCTCTCTAGTGGTCGTTGCTGTTTTTGGTCCTACCCTCCAAA
TGCTATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAATTGCTTCCAGACCGC
TTTACACTCCCATTGGCAGCACTCGGTTTAGCCATTAATAGTTTTGCGATCTACACCACAGCAAACTCAGCAATTTGGGG
TTATGTGATTGGCTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATATTTACTGGCAAAGAGGGTATGGGCTATG
GCGATTTTAAATTACTGGCTGCATTAGGGGCTTGGATGGGTCCAATGCTCTTGCCTTTAATTGTGTTACTTTCTTCTGTT
GTCGGTGCAATTATTGGTATCATCTTATTGAAAATGCGCGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAAT
TGCAGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	84.266	100	0.843
pilD	Acinetobacter baumannii D1279779	83.217	100	0.832
pilD	Vibrio cholerae strain A1552	55.97	93.706	0.524
pilD	Vibrio campbellii strain DS40M4	54.135	93.007	0.503
pilD	Neisseria gonorrhoeae MS11	47.619	95.455	0.455