Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PE066_RS15380 Genome accession   NZ_CP116009
Coordinates   3225084..3226301 (-) Length   405 a.a.
NCBI ID   WP_271233404.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis strain DMF-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3220084..3231301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE066_RS15350 (PE066_15350) - 3221277..3222149 (+) 873 WP_271233398.1 ATP-binding protein -
  PE066_RS15355 (PE066_15355) - 3222146..3222619 (+) 474 WP_271233399.1 NUDIX domain-containing protein -
  PE066_RS15360 (PE066_15360) - 3222623..3222838 (-) 216 WP_271233400.1 DNA gyrase inhibitor YacG -
  PE066_RS15365 (PE066_15365) zapD 3222841..3223596 (-) 756 WP_271233401.1 cell division protein ZapD -
  PE066_RS15370 (PE066_15370) coaE 3223634..3224242 (-) 609 WP_271233402.1 dephospho-CoA kinase -
  PE066_RS15375 (PE066_15375) pilD 3224245..3225084 (-) 840 WP_271233403.1 A24 family peptidase Machinery gene
  PE066_RS15380 (PE066_15380) pilC 3225084..3226301 (-) 1218 WP_271233404.1 type II secretion system F family protein Machinery gene
  PE066_RS15385 (PE066_15385) pilB 3226334..3228073 (-) 1740 WP_271233405.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PE066_RS15395 (PE066_15395) - 3228346..3229275 (-) 930 WP_271236593.1 polyprenyl synthetase family protein -
  PE066_RS15400 (PE066_15400) rplU 3229469..3229780 (+) 312 WP_271233406.1 50S ribosomal protein L21 -
  PE066_RS15405 (PE066_15405) rpmA 3229800..3230057 (+) 258 WP_271233407.1 50S ribosomal protein L27 -
  PE066_RS15410 (PE066_15410) cgtA 3230139..3231221 (+) 1083 WP_271233408.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44269.87 Da        Isoelectric Point: 8.7909

>NTDB_id=774921 PE066_RS15380 WP_271233404.1 3225084..3226301(-) (pilC) [Ramlibacter tataouinensis strain DMF-7]
MATASAAKVTEFVFEWEGRDRNGKQVRGETRAAGENQVQATLRRQGITPSKIKKRRMRAGQKIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNANPSVAKLLNDIRTDVETGTSLSAAFRKFPLYFDNLYCNLVEAGEAAGILETLLDRLAVYMEKT
EGIKSKIKSALMYPISVVVVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMAVSEYFVQYWWLIFGGIGGGLYFFM
QAWKRNEKVQMFMDRVMLQLPVFGDLVYKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYQTATEKIQQEVSTGT
SLTAAMTNANVFPTMVLQMCAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGGLIGGIVVSMYLPIFK
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=774921 PE066_RS15380 WP_271233404.1 3225084..3226301(-) (pilC) [Ramlibacter tataouinensis strain DMF-7]
ATGGCGACGGCATCAGCAGCGAAGGTCACCGAGTTCGTCTTCGAATGGGAGGGCCGCGACCGCAATGGCAAGCAGGTTCG
CGGCGAAACCCGCGCGGCCGGCGAGAACCAGGTCCAGGCGACCCTGCGCCGGCAGGGCATCACGCCCAGCAAGATCAAGA
AGCGCCGCATGCGCGCCGGCCAGAAGATCAAGCCCAAGGACATCGCGATCTTCACCCGGCAGCTCGCCACCATGATGAAG
GCGGGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCCGCGGCAATGCCAACCCGAGCGTGGCCAAGCTGCTCAACGA
CATCCGCACCGACGTCGAGACCGGCACCTCGCTGTCGGCCGCGTTCCGCAAGTTCCCGCTGTACTTCGACAACCTGTACT
GCAACCTGGTCGAGGCCGGCGAGGCCGCCGGCATCCTGGAGACGCTGCTCGACCGCCTGGCGGTCTACATGGAAAAGACC
GAGGGCATCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCGATCTCGGTGGTGGTGGTGGCGTTCGTGGTGGTGGCGGT
GATCATGATCTTCGTGATTCCGGCCTTCAAGGAGGTGTTCACCTCGTTCGGCGCCGACCTGCCCGCGCCCACGCTGTTCG
TCATGGCCGTCAGCGAGTACTTCGTTCAGTACTGGTGGCTGATCTTCGGCGGCATCGGCGGCGGCCTGTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGAAGGTGCAGATGTTCATGGACCGGGTGATGCTCCAGCTGCCGGTGTTCGGCGACCTGGT
CTACAAATCGGTGATCGCCCGCTGGACCCGCACCCTGGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTGGAAGCCCTCG
ACTCGGTGGGCGGCGCTTCGGGCAATTCGGTCTACCAGACGGCCACCGAGAAGATCCAGCAGGAGGTGTCCACCGGCACC
AGCCTGACAGCGGCCATGACCAATGCCAACGTGTTCCCGACCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTCCGG
CTCGATCGACCACATGCTGGGCAAGGCGGCCGACTTCTACGAGTCGGAGGTCGATGACATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCGATCATCATCGTGTTCCTCGGCGGCCTGATCGGCGGCATCGTGGTCTCGATGTACCTGCCCATCTTCAAG
CTCGGCGCAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

97.778

0.536
  pilC Acinetobacter baylyi ADP1

52.334

100

0.526
  pilG Neisseria gonorrhoeae MS11

52.369

99.012

0.519
  pilG Neisseria meningitidis 44/76-A

52.12

99.012

0.516
  pilC Legionella pneumophila strain ERS1305867

50.503

98.272

0.496
  pilC Acinetobacter baumannii D1279779

50.126

98.025

0.491
  pilC Vibrio cholerae strain A1552

41.562

98.025

0.407
  pilC Vibrio campbellii strain DS40M4

39.901

100

0.4
  pilC Thermus thermophilus HB27

38.647

100

0.395