Detailed information NTG0774920

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PE066_RS15375
• Genome accession: NZ_CP116009
• Coordinates: 3224245..3225084 (-)
• Length: 279 a.a.
• NCBI ID: WP_271233403.1
• Uniprot ID: -
• Organism: Ramlibacter tataouinensis strain DMF-7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3219245..3230084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PE066_RS15340 (PE066_15340)	-	3219560..3220030 (+)	471	WP_271233396.1	rhodanese-like domain-containing protein	-
PE066_RS15345 (PE066_15345)	argJ	3220054..3221280 (+)	1227	WP_271233397.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
PE066_RS15350 (PE066_15350)	-	3221277..3222149 (+)	873	WP_271233398.1	ATP-binding protein	-
PE066_RS15355 (PE066_15355)	-	3222146..3222619 (+)	474	WP_271233399.1	NUDIX domain-containing protein	-
PE066_RS15360 (PE066_15360)	-	3222623..3222838 (-)	216	WP_271233400.1	DNA gyrase inhibitor YacG	-
PE066_RS15365 (PE066_15365)	zapD	3222841..3223596 (-)	756	WP_271233401.1	cell division protein ZapD	-
PE066_RS15370 (PE066_15370)	coaE	3223634..3224242 (-)	609	WP_271233402.1	dephospho-CoA kinase	-
PE066_RS15375 (PE066_15375)	pilD	3224245..3225084 (-)	840	WP_271233403.1	A24 family peptidase	Machinery gene
PE066_RS15380 (PE066_15380)	pilC	3225084..3226301 (-)	1218	WP_271233404.1	type II secretion system F family protein	Machinery gene
PE066_RS15385 (PE066_15385)	pilB	3226334..3228073 (-)	1740	WP_271233405.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PE066_RS15395 (PE066_15395)	-	3228346..3229275 (-)	930	WP_271236593.1	polyprenyl synthetase family protein	-
PE066_RS15400 (PE066_15400)	rplU	3229469..3229780 (+)	312	WP_271233406.1	50S ribosomal protein L21	-
PE066_RS15405 (PE066_15405)	rpmA	3229800..3230057 (+)	258	WP_271233407.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 279 a.a.
• Molecular weight: 29838.29 Da
• Isoelectric Point: 8.3773

>NTDB_id=774920 PE066_RS15375 WP_271233403.1 3224245..3225084(-) (pilD) [Ramlibacter tataouinensis strain DMF-7]
MFPVEAGAVLAGVLGLLVGSFLNVVIHRLPRMLERQWAAECAELAGQAPAPAEPFNLVRPRSRCRNCGHAIRWYENIPVL
SYLALRGKCSSCGTPIGLRYPLVEIATAGFFAFCGWKWGISWTAAAWCGFAAALLALALIDWDTTLLPDDITLPLVWAGL
IAAALRWNGLTLQQSLWGAVAGYLSLWLVYQGFKLLTGKEGMGYGDFKLFAALGAWFGWQALIPMVLMASVIGAIIGIAM
KLSDNLREGGAIPFGPFLAGAGLTALVFGPSSILRAVGL

Nucleotide

• Length: 840 bp

>NTDB_id=774920 PE066_RS15375 WP_271233403.1 3224245..3225084(-) (pilD) [Ramlibacter tataouinensis strain DMF-7]
ATGTTTCCCGTCGAAGCGGGCGCCGTGCTGGCCGGCGTCCTGGGGTTGCTGGTGGGCAGCTTCCTGAACGTCGTCATCCA
CCGGCTGCCCCGGATGCTGGAGCGGCAGTGGGCGGCCGAATGCGCCGAGCTGGCCGGGCAGGCGCCGGCGCCGGCCGAGC
CGTTCAACCTGGTGCGGCCGCGCTCGCGCTGCCGCAACTGCGGCCATGCGATCCGCTGGTACGAGAACATCCCCGTGCTG
AGCTACCTGGCCTTGCGCGGCAAGTGCTCCTCCTGCGGCACGCCGATCGGCTTGCGTTATCCGCTGGTGGAGATCGCCAC
CGCCGGATTTTTTGCGTTCTGCGGCTGGAAGTGGGGTATCAGCTGGACGGCTGCGGCCTGGTGCGGCTTCGCCGCGGCCC
TGCTCGCCCTGGCCCTGATCGACTGGGACACCACGCTGCTGCCGGACGACATCACGCTGCCGCTGGTGTGGGCCGGCCTG
ATCGCCGCCGCGCTGCGCTGGAACGGCCTGACGCTGCAGCAGTCGCTGTGGGGGGCGGTGGCGGGCTACCTGTCGCTGTG
GCTGGTCTACCAGGGTTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGTTCGCCGCGCTCG
GCGCCTGGTTCGGCTGGCAAGCGTTGATCCCCATGGTGCTGATGGCCTCGGTGATCGGCGCGATCATCGGCATCGCAATG
AAGCTCTCCGACAACCTGCGCGAAGGCGGCGCCATCCCGTTCGGGCCCTTCCTGGCTGGCGCCGGCCTGACGGCGCTGGT
GTTCGGCCCCTCGTCGATCCTGCGCGCGGTCGGCCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-118)

• Type IV leader peptidase family (Peptidase_A24) (130-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.321	94.982	0.487
pilD	Vibrio cholerae strain A1552	50.746	96.057	0.487
pilD	Neisseria gonorrhoeae MS11	48.627	91.398	0.444
pilD	Acinetobacter nosocomialis M2	44.656	93.907	0.419
pilD	Acinetobacter baumannii D1279779	44.656	93.907	0.419