Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QR290_RS05430 Genome accession   NZ_CP128260
Coordinates   1232170..1233150 (-) Length   326 a.a.
NCBI ID   WP_007953682.1    Uniprot ID   A0ABY3Q4W0
Organism   Pseudomonas fluorescens strain PH.SM     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227170..1238150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS05410 (QR290_05410) - 1227682..1228371 (-) 690 WP_197871818.1 ABC transporter permease -
  QR290_RS05415 (QR290_05415) - 1228727..1230310 (+) 1584 WP_085608055.1 peptide chain release factor 3 -
  QR290_RS05420 (QR290_05420) - 1230432..1231640 (+) 1209 WP_289204503.1 MFS transporter -
  QR290_RS05425 (QR290_05425) - 1231802..1232062 (+) 261 WP_289204504.1 hypothetical protein -
  QR290_RS05430 (QR290_05430) amiE 1232170..1233150 (-) 981 WP_007953682.1 peptide ABC transporter ATP-binding protein Regulator
  QR290_RS05435 (QR290_05435) - 1233150..1234118 (-) 969 WP_011332433.1 ABC transporter ATP-binding protein -
  QR290_RS05440 (QR290_05440) - 1234129..1235055 (-) 927 WP_039769224.1 ABC transporter permease subunit -
  QR290_RS05445 (QR290_05445) - 1235067..1236077 (-) 1011 WP_007953665.1 ABC transporter permease subunit -
  QR290_RS05450 (QR290_05450) - 1236151..1237746 (-) 1596 WP_289204505.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35953.43 Da        Isoelectric Point: 8.8314

>NTDB_id=773411 QR290_RS05430 WP_007953682.1 1232170..1233150(-) (amiE) [Pseudomonas fluorescens strain PH.SM]
MAVVLTARDLTRHYEVSRGLFKGHATVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIEEPSSGSLKIAGQEVAG
ADKAQRKQLRKDVQMVFQSPYASLNPRQKIGDQLAEPLLINTNLSAAERREKVQAMMKQVGLRPEHYQRYPHMFSGGQRQ
RIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDMQQEFNTGYVFISHNLAVVQHVADDVMVMYLGRPVEIGPKHD
IYARPLHPYTQALLSATPTIHPDPDKPKIKIVGELPNPLNPPPGCAFHKRCPYATARCSSEEPALRQLDTRQVACHYAEQ
FLDGAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=773411 QR290_RS05430 WP_007953682.1 1232170..1233150(-) (amiE) [Pseudomonas fluorescens strain PH.SM]
ATGGCCGTCGTACTTACCGCCCGCGACCTGACCCGTCACTACGAAGTCTCCCGTGGCCTGTTCAAGGGCCATGCGACCGT
ACGCGCCCTCAACGGCGTGTCGTTCGAGCTGGAAGCCGGCAAGACCCTCGCCGTCGTTGGTGAATCGGGCTGCGGCAAGT
CCACCCTCGCCCGCGCCCTGACACTGATCGAAGAGCCGTCGTCCGGTTCCCTGAAAATCGCCGGCCAGGAAGTGGCTGGC
GCCGACAAGGCCCAGCGCAAACAACTGCGCAAAGACGTGCAGATGGTGTTCCAGAGCCCATACGCGTCGTTGAACCCACG
GCAGAAAATCGGTGATCAACTGGCCGAACCGCTGCTGATCAACACCAACCTGAGTGCTGCCGAGCGTCGCGAGAAAGTCC
AGGCGATGATGAAGCAGGTCGGCTTGCGTCCCGAGCACTACCAGCGTTATCCGCACATGTTCTCCGGCGGTCAGCGTCAG
CGTATCGCGCTGGCCCGCGCCATGATGCTGCAACCGAAAGTGCTGGTGGCGGACGAACCGACCTCGGCGCTGGACGTGTC
GATCCAGGCGCAGGTGCTGAACCTGTTCATGGACATGCAACAGGAGTTCAACACCGGTTACGTGTTCATCTCGCACAACC
TGGCGGTAGTGCAGCACGTGGCCGATGACGTGATGGTGATGTACCTCGGTCGTCCGGTGGAAATCGGTCCGAAGCACGAC
ATCTATGCCCGTCCTCTGCACCCGTACACCCAGGCGCTGTTGTCGGCGACCCCGACCATCCACCCGGATCCGGACAAGCC
GAAAATCAAGATCGTCGGCGAGTTGCCCAACCCGCTGAACCCGCCACCTGGCTGCGCGTTCCACAAGCGCTGCCCGTACG
CCACCGCGCGTTGCAGCAGCGAAGAGCCGGCCCTGCGTCAGCTCGACACCCGTCAGGTGGCGTGCCACTACGCCGAGCAG
TTCCTCGACGGCGCGGCATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-298)

ABC transporter (ABC_tran)

(30-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.17

100

0.365
  oppD Streptococcus mutans UA159

38.511

94.785

0.365
  amiE Streptococcus thermophilus LMG 18311

35.866

100

0.362
  amiE Streptococcus thermophilus LMD-9

35.866

100

0.362