Detailed information NTG0773411

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: O6P39_RS04825
• Genome accession: NZ_CP115669
• Coordinates: 1026474..1027691 (-)
• Length: 405 a.a.
• NCBI ID: WP_275610276.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PSE14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1021474..1032691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6P39_RS04780 (O6P39_04780)	-	1021798..1021968 (-)	171	WP_017516731.1	DUF3094 domain-containing protein	-
O6P39_RS04785 (O6P39_04785)	-	1022051..1022680 (-)	630	WP_275611888.1	DUF1780 domain-containing protein	-
O6P39_RS04790 (O6P39_04790)	-	1022786..1023202 (+)	417	WP_275610270.1	GNAT family N-acetyltransferase	-
O6P39_RS04795 (O6P39_04795)	-	1023205..1023672 (+)	468	WP_275610271.1	FAD/FMN-containing dehydrogenase	-
O6P39_RS04800 (O6P39_04800)	-	1023669..1024358 (+)	690	WP_275610272.1	energy-coupling factor ABC transporter permease	-
O6P39_RS04805 (O6P39_04805)	-	1024466..1024681 (+)	216	WP_275610273.1	hypothetical protein	-
O6P39_RS04810 (O6P39_04810)	yacG	1024722..1024925 (-)	204	WP_015475735.1	DNA gyrase inhibitor YacG	-
O6P39_RS04815 (O6P39_04815)	coaE	1024922..1025530 (-)	609	WP_275610274.1	dephospho-CoA kinase	-
O6P39_RS04820 (O6P39_04820)	pilD	1025596..1026468 (-)	873	WP_275610275.1	A24 family peptidase	Machinery gene
O6P39_RS04825 (O6P39_04825)	pilC	1026474..1027691 (-)	1218	WP_275610276.1	type II secretion system F family protein	Machinery gene
O6P39_RS04830 (O6P39_04830)	pilB	1027695..1029398 (-)	1704	WP_275610277.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O6P39_RS04835 (O6P39_04835)	-	1029625..1030059 (+)	435	WP_275610278.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
O6P39_RS04845 (O6P39_04845)	galE	1030274..1031296 (-)	1023	WP_275610279.1	UDP-glucose 4-epimerase GalE	-
O6P39_RS04850 (O6P39_04850)	nadC	1031597..1032445 (-)	849	WP_275610280.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44220.81 Da
• Isoelectric Point: 9.7876

>NTDB_id=773411 O6P39_RS04825 WP_275610276.1 1026474..1027691(-) (pilC) [Pseudomonas sp. PSE14]
MAEKALKTSVFTWEGTDRKGGKIKGELSGTSPALIKAQLRKQGINPIKVRKKGVSLLGKGKKIKPLDIALFTRQMATMMS
SGVPLLQSFDIIGEGFENPNMRKLVDEIKQEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFAGFGAELPAFTRMVIYISEVLQDWWFIVLIAIAAITFAFK
EAHRRSEKFRDSVDRSILKLPIVGDILYKSSVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVNRIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDSMLDKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=773411 O6P39_RS04825 WP_275610276.1 1026474..1027691(-) (pilC) [Pseudomonas sp. PSE14]
ATGGCGGAAAAAGCATTGAAGACCAGTGTCTTTACCTGGGAAGGCACTGATCGCAAGGGCGGGAAGATCAAAGGGGAACT
CTCGGGGACCAGCCCAGCACTGATCAAGGCTCAGTTGCGCAAGCAAGGTATCAACCCGATCAAGGTGCGCAAAAAGGGCG
TCTCACTACTGGGCAAGGGTAAGAAGATCAAGCCGCTGGACATCGCCCTGTTCACCCGGCAGATGGCAACCATGATGAGT
TCGGGTGTTCCGCTGCTGCAATCCTTCGACATCATTGGCGAAGGATTCGAGAACCCGAACATGCGGAAGCTGGTAGATGA
AATCAAACAGGAGGTCGCCGCCGGTAACAGTCTGGCCAACTCCCTGCGCAAGAAGCCACAATACTTCGACGACCTATACT
GCAACCTGGTGGACGCGGGCGAACAGTCCGGCGCCTTGGAAACCCTGCTCGACCGTGTGGCAACCTATAAGGAAAAGACC
GAGTCGCTCAAGGCCAAGATCAAGAAGGCCATGACCTATCCCATTGCGGTCATCGTCGTCGCCATCATCGTGTCGGCCAT
TCTGCTGATCAAGGTAGTACCGCAATTCCAATCGGTATTCGCCGGTTTCGGAGCAGAGCTTCCTGCGTTCACCCGAATGG
TCATCTACATTTCCGAAGTACTGCAGGACTGGTGGTTTATCGTATTGATTGCAATAGCCGCCATCACCTTCGCATTTAAA
GAAGCCCATCGGCGCTCGGAGAAATTCAGAGACAGCGTGGATCGCTCGATACTGAAGCTCCCCATCGTCGGAGACATTCT
CTACAAGTCCTCCGTCGCCCGTTATGCGCGTACGCTCTCCACCACCTTCGCAGCAGGCGTTCCCCTGGTGGAGGCACTGG
ACTCGGTATCCGGTGCCACCGGCAACGTGGTATTCCGTAATGCGGTGAATAGGATCAAACAGGACGTTTCCTCCGGTACC
CAACTGAACTTCTCCATGCGCACCACTGGCGTCTTCCCGAGCATGGCTATCCAGATGGCCGCCATCGGCGAGGAGTCCGG
CTCGCTGGACTCCATGCTGGACAAGGTCGCCAGCTACTACGAGGAGGAAGTCGATAACGCCGTCGACAACCTCACCACGC
TGATGGAGCCAATGATCATGGCCGTACTCGGCGTGCTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAA
CTGGGCAACGTCGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	80.741	100	0.807
pilC	Acinetobacter baumannii D1279779	62.222	100	0.622
pilC	Acinetobacter baylyi ADP1	60.591	100	0.607
pilC	Legionella pneumophila strain ERS1305867	54.798	97.778	0.536
pilG	Neisseria meningitidis 44/76-A	44.776	99.259	0.444
pilG	Neisseria gonorrhoeae MS11	44.527	99.259	0.442
pilC	Vibrio cholerae strain A1552	42.469	100	0.425
pilC	Vibrio campbellii strain DS40M4	40.152	97.778	0.393
pilC	Thermus thermophilus HB27	37.157	99.012	0.368