Detailed information NTG0773410

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: O6P39_RS04820
• Genome accession: NZ_CP115669
• Coordinates: 1025596..1026468 (-)
• Length: 290 a.a.
• NCBI ID: WP_275610275.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PSE14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1020596..1031468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O6P39_RS04780 (O6P39_04780)	-	1021798..1021968 (-)	171	WP_017516731.1	DUF3094 domain-containing protein	-
O6P39_RS04785 (O6P39_04785)	-	1022051..1022680 (-)	630	WP_275611888.1	DUF1780 domain-containing protein	-
O6P39_RS04790 (O6P39_04790)	-	1022786..1023202 (+)	417	WP_275610270.1	GNAT family N-acetyltransferase	-
O6P39_RS04795 (O6P39_04795)	-	1023205..1023672 (+)	468	WP_275610271.1	FAD/FMN-containing dehydrogenase	-
O6P39_RS04800 (O6P39_04800)	-	1023669..1024358 (+)	690	WP_275610272.1	energy-coupling factor ABC transporter permease	-
O6P39_RS04805 (O6P39_04805)	-	1024466..1024681 (+)	216	WP_275610273.1	hypothetical protein	-
O6P39_RS04810 (O6P39_04810)	yacG	1024722..1024925 (-)	204	WP_015475735.1	DNA gyrase inhibitor YacG	-
O6P39_RS04815 (O6P39_04815)	coaE	1024922..1025530 (-)	609	WP_275610274.1	dephospho-CoA kinase	-
O6P39_RS04820 (O6P39_04820)	pilD	1025596..1026468 (-)	873	WP_275610275.1	A24 family peptidase	Machinery gene
O6P39_RS04825 (O6P39_04825)	pilC	1026474..1027691 (-)	1218	WP_275610276.1	type II secretion system F family protein	Machinery gene
O6P39_RS04830 (O6P39_04830)	pilB	1027695..1029398 (-)	1704	WP_275610277.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O6P39_RS04835 (O6P39_04835)	-	1029625..1030059 (+)	435	WP_275610278.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
O6P39_RS04845 (O6P39_04845)	galE	1030274..1031296 (-)	1023	WP_275610279.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31864.82 Da
• Isoelectric Point: 7.0077

>NTDB_id=773410 O6P39_RS04820 WP_275610275.1 1025596..1026468(-) (pilD) [Pseudomonas sp. PSE14]
MSVLNFLASTPLAFVLCALVLGLLVGSFLNVVIHRLPRMMERDWQREARLALDLPEGEPQPTYNLILPNSQCPHCGHEIK
AWENIPVVSYLALGGKCSSCKAPISKRYPLIELACGALSAFIAWHYGFGWQAGAMLLLGWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNYFGLFTSLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIITLRLRKAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFH

Nucleotide

• Length: 873 bp

>NTDB_id=773410 O6P39_RS04820 WP_275610275.1 1025596..1026468(-) (pilD) [Pseudomonas sp. PSE14]
ATGTCAGTCCTCAACTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGCGCGCTCGTACTCGGGCTTTTGGTCGGTAG
TTTCCTCAACGTAGTCATCCATCGCCTGCCGCGGATGATGGAGCGTGACTGGCAGCGCGAAGCACGTCTGGCTCTCGATC
TGCCGGAAGGCGAGCCGCAGCCCACCTACAACCTGATTCTCCCGAACTCCCAGTGCCCGCACTGCGGCCACGAGATCAAG
GCCTGGGAAAACATTCCCGTGGTGAGCTACCTGGCGCTGGGTGGTAAGTGCTCGTCCTGCAAGGCTCCGATCAGCAAGCG
CTACCCGCTGATCGAGTTGGCCTGTGGCGCGCTCTCGGCCTTCATCGCCTGGCACTATGGCTTCGGCTGGCAGGCCGGCG
CCATGCTGCTGCTCGGCTGGGGGCTGCTGGCGATGAGCATGATCGACGTCGATCACCAGTTGCTGCCAGATGCGCTGGTA
CTGCCATTGCTGTGGTTGGGCCTGATCGTCAATTACTTCGGACTGTTCACCAGTCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGTTGCTCACCGGCAAGGAGGGCATGGGTTACGGCGACT
TCAAACTGCTGGCCATGCTCGGCGCCTGGGGTGGTTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGA
GCGGTGCTGGGCATCATCACCCTGCGCCTGCGCAAGGCCGAAACCAGTACGCCGATCCCCTTCGGCCCTTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.475	95.862	0.541
pilD	Vibrio campbellii strain DS40M4	55.036	95.862	0.528
pilD	Acinetobacter baumannii D1279779	51.957	96.897	0.503
pilD	Acinetobacter nosocomialis M2	51.957	96.897	0.503
pilD	Neisseria gonorrhoeae MS11	51.071	96.552	0.493