Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O6P39_RS04665 Genome accession   NZ_CP115669
Coordinates   993493..994833 (-) Length   446 a.a.
NCBI ID   WP_275610251.1    Uniprot ID   -
Organism   Pseudomonas sp. PSE14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 988493..999833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P39_RS04635 (O6P39_04635) - 988999..989625 (-) 627 WP_275610245.1 PilX N-terminal domain-containing pilus assembly protein -
  O6P39_RS04640 (O6P39_04640) - 989622..990470 (-) 849 WP_275610246.1 PilW family protein -
  O6P39_RS04645 (O6P39_04645) pilV 990467..991027 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  O6P39_RS04650 (O6P39_04650) - 991036..991518 (-) 483 WP_275610248.1 GspH/FimT family pseudopilin -
  O6P39_RS04655 (O6P39_04655) - 991669..992181 (-) 513 WP_275610249.1 GspH/FimT family pseudopilin -
  O6P39_RS04660 (O6P39_04660) thiO 992371..993480 (+) 1110 WP_275610250.1 glycine oxidase ThiO -
  O6P39_RS04665 (O6P39_04665) pilR 993493..994833 (-) 1341 WP_275610251.1 sigma-54 dependent transcriptional regulator Regulator
  O6P39_RS04670 (O6P39_04670) pilS 994849..996438 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  O6P39_RS04675 (O6P39_04675) - 996428..996664 (-) 237 WP_275610253.1 PP0621 family protein -
  O6P39_RS04680 (O6P39_04680) - 996802..997827 (-) 1026 WP_275610254.1 outer membrane protein assembly factor BamD -
  O6P39_RS04685 (O6P39_04685) rluD 997977..998936 (+) 960 WP_275610255.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  O6P39_RS04690 (O6P39_04690) pgeF 998933..999658 (+) 726 WP_275610256.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49832.07 Da        Isoelectric Point: 5.6471

>NTDB_id=773407 O6P39_RS04665 WP_275610251.1 993493..994833(-) (pilR) [Pseudomonas sp. PSE14]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVSTALRLRFPDAEEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRANIAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQENSVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LQRLAGDAGLPVATVSPDALEKLKSYRFPGNVRELENMLERAYTLCENDVIQPQDLRLAETSTGGDNGGQASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=773407 O6P39_RS04665 WP_275610251.1 993493..994833(-) (pilR) [Pseudomonas sp. PSE14]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGTAACGTCAAGGAAGCGCGCGAATTCCTGGCCCGCGAACCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGGCTGGACCTGGTGCAGTACATCCAGCAGCGCCACCCGCAAACCCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCCGTGCAGGCACTCAAGGCCGGCGCCTTTGACTTCCTCACCAAGCCGGTCGA
CCTGGGACGCCTGCGCGAGCTGGTCAGCACGGCGCTGCGCCTGCGCTTCCCCGATGCCGAAGAGGCACCGGTGGACAACC
GACTGCTGGGCGACTCCCCCCCAATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCACCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCATGAACAGGGCCCGCGCGCCAATATCGCCTT
CGTCCCGGTGAACTGCGGCGCGATTCCTTCGGAGCTGATGGAAAGCGAATTCTTCGGTCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAGGACAAGCAGGGGCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTTGCCGACCTACCC
CTGCCCATGCAGGTCAAACTGCTGCGGGCGATCCAGGAGAAGGCCGTGCGCGCCGTCGGCGGCCAACAGGAAAATTCAGT
GGACGTGCGCGTCCTCTGTGCAACCCACAAGGACCTCGCGGCGGAAGTCGCCGCCGGCCGTTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGCGAGCGCCGCGAGGACATTCCGCTGCTCACCGAACGCGTA
CTCCAGCGCCTGGCCGGCGATGCCGGGCTGCCCGTGGCGACAGTCAGCCCGGACGCCTTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGAACGATGTGATCCAGCCGC
AGGACCTGCGCCTGGCCGAAACCAGCACCGGTGGCGACAATGGCGGGCAGGCCAGTCTCGCGCAGATCGACAACCTCGAG
GACTACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAGACCCGCTGGAACCGCACCGCGGCAGCACA
GCGACTCGGGCTCACCTTCCGCTCGATGCGTTATCGGTTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.789

100

0.888
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511