Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   O6P39_RS04670 Genome accession   NZ_CP115669
Coordinates   994849..996438 (-) Length   529 a.a.
NCBI ID   WP_275610252.1    Uniprot ID   -
Organism   Pseudomonas sp. PSE14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 989849..1001438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P39_RS04645 (O6P39_04645) pilV 990467..991027 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  O6P39_RS04650 (O6P39_04650) - 991036..991518 (-) 483 WP_275610248.1 GspH/FimT family pseudopilin -
  O6P39_RS04655 (O6P39_04655) - 991669..992181 (-) 513 WP_275610249.1 GspH/FimT family pseudopilin -
  O6P39_RS04660 (O6P39_04660) thiO 992371..993480 (+) 1110 WP_275610250.1 glycine oxidase ThiO -
  O6P39_RS04665 (O6P39_04665) pilR 993493..994833 (-) 1341 WP_275610251.1 sigma-54 dependent transcriptional regulator Regulator
  O6P39_RS04670 (O6P39_04670) pilS 994849..996438 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  O6P39_RS04675 (O6P39_04675) - 996428..996664 (-) 237 WP_275610253.1 PP0621 family protein -
  O6P39_RS04680 (O6P39_04680) - 996802..997827 (-) 1026 WP_275610254.1 outer membrane protein assembly factor BamD -
  O6P39_RS04685 (O6P39_04685) rluD 997977..998936 (+) 960 WP_275610255.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  O6P39_RS04690 (O6P39_04690) pgeF 998933..999658 (+) 726 WP_275610256.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58709.90 Da        Isoelectric Point: 7.3615

>NTDB_id=773408 O6P39_RS04670 WP_275610252.1 994849..996438(-) (pilS) [Pseudomonas sp. PSE14]
MATEGISLTGQGRRVLRLYHLYRLTIGLVLVLLISSNLDGEVLKLAHTELFHIGCWTYLVVNILIAVLMPAPRHLMPLFI
LAALDVLMLSGLFYTAGGVPSGIGTLMVIAVAIANILLRGRIGLLIAALASIGLIYLTFYISLTQEIAFNHYVQAGGLGA
LCFASALLIQALARRQQVIENLAEQRAATVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGGQELTGQPLAE
HSPALLNSLRLWQQNPALRPPSLQPHDTAPSVQPAFIPLHRGNEQHTLMFLEDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQALDLKYWLQRFVDEQREGLRENQ
QLHVETGPGAVQTRMDPHQLTQVLTNLVQNGLRYSAKKNGTGQVWLRLFRDSETDLPILEVLDDGQGIAAEQRGRLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRLTFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=773408 O6P39_RS04670 WP_275610252.1 994849..996438(-) (pilS) [Pseudomonas sp. PSE14]
GTGGCCACTGAAGGCATTTCGCTCACCGGGCAGGGACGGCGCGTCCTGCGCCTGTATCACCTGTACCGCCTGACCATCGG
TCTGGTCCTGGTACTGCTGATTTCCAGCAACCTTGACGGCGAAGTCCTCAAGCTCGCCCACACCGAACTGTTCCACATCG
GCTGCTGGACCTACCTGGTGGTGAACATCCTGATCGCCGTCCTGATGCCGGCGCCCCGGCATCTGATGCCGCTGTTCATC
CTGGCGGCACTCGACGTGCTGATGCTCAGCGGGCTGTTCTACACCGCCGGCGGCGTCCCCAGCGGTATTGGCACGCTGAT
GGTGATCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGCCGGATAGGCCTTTTGATCGCCGCATTGGCGTCCATCGGGC
TGATCTACCTGACCTTCTACATCAGCCTTACCCAGGAGATCGCCTTCAACCACTATGTACAGGCCGGCGGGCTGGGCGCC
CTGTGCTTCGCCTCGGCGCTGCTGATCCAGGCGCTGGCGCGCCGCCAACAGGTCATCGAAAACCTCGCGGAACAACGGGC
CGCCACGGTAGCCAACCTCGAAGAACTCAACGCCCTGATCCTCCAGCGCATGCGTACCGGCATCCTTGTGCTGGACGATC
AGCAGCGCGTGCTGCTGGCCAACCAGAGCGCCACCACACTGCTCGGCGGACAGGAACTGACAGGGCAGCCGCTGGCCGAG
CACAGCCCGGCGCTGCTCAACAGCCTGCGGCTGTGGCAGCAGAACCCCGCCCTGCGGCCCCCCAGCCTGCAACCACACGA
CACCGCGCCCAGCGTGCAGCCTGCCTTCATCCCCCTGCACCGCGGCAATGAACAGCACACCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCTCAGCAGCTCAAGCTCGCCTCGCTCGGCCGCCTGACCGCCGGCATCGCCCATGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAATTGCTGCTGGAGTCCGAAGAGCTCGATCCGCCGGATCGACGACT
GACACAGATCATCCAGGACCAGTCGCGGCGGATGAACCTGGTGATCGAGAACGTGCTGCAGCTTTCCCGCCGACGCCAGG
CGGAACCCCAAGCGCTCGACCTGAAATACTGGCTGCAACGTTTCGTCGACGAACAGCGTGAGGGGCTGCGCGAAAACCAG
CAGCTGCATGTCGAAACCGGGCCCGGCGCTGTGCAGACGCGCATGGACCCGCATCAGCTGACGCAGGTGCTGACCAATCT
GGTCCAGAATGGGTTACGGTACAGCGCCAAGAAAAACGGCACTGGCCAGGTGTGGTTGCGCCTGTTCCGCGACAGCGAAA
CCGACCTGCCGATCCTGGAAGTCCTCGACGATGGCCAGGGCATTGCTGCGGAGCAGCGGGGGAGGCTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGTCTTGGGCTGTACATCTCCCGGGAGCTCTGTGAAAGCAACCAGGCGCGCCTGGA
CTATAAAACGCGTGACGAGGGTGGCAGTTGCTTCCGCCTCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

72.254

98.11

0.709