Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QR290_RS01120 Genome accession   NZ_CP128260
Coordinates   250000..251100 (+) Length   366 a.a.
NCBI ID   WP_289204140.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 245000..256100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS01100 (QR290_01100) rsmB 245896..247206 (-) 1311 WP_115079800.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QR290_RS01105 (QR290_01105) fmt 247203..248162 (-) 960 WP_289204138.1 methionyl-tRNA formyltransferase -
  QR290_RS01110 (QR290_01110) def 248219..248725 (-) 507 WP_007954104.1 peptide deformylase -
  QR290_RS01115 (QR290_01115) tsaP 248895..249920 (+) 1026 WP_289204139.1 LysM domain-containing protein Machinery gene
  QR290_RS01120 (QR290_01120) dprA 250000..251100 (+) 1101 WP_289204140.1 DNA-processing protein DprA Machinery gene
  QR290_RS01125 (QR290_01125) - 251155..251712 (+) 558 WP_007954101.1 L-threonylcarbamoyladenylate synthase -
  QR290_RS01130 (QR290_01130) - 251985..252656 (+) 672 WP_289204141.1 hypothetical protein -
  QR290_RS01135 (QR290_01135) - 252634..253368 (+) 735 WP_289204142.1 iron-containing redox enzyme family protein -
  QR290_RS01140 (QR290_01140) - 253411..254505 (+) 1095 WP_115079806.1 DUF3419 family protein -
  QR290_RS01145 (QR290_01145) - 254502..255770 (+) 1269 WP_115079807.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38925.66 Da        Isoelectric Point: 7.5402

>NTDB_id=773398 QR290_RS01120 WP_289204140.1 250000..251100(+) (dprA) [Pseudomonas fluorescens strain PH.SM]
MMMPDSSPVSPAEMEARLRLHRLPEIGPKRFTKLLEAFGSASKAISAPASAWRSLGLPATCAEARRCPEVRDGASHALRW
LERPNQHLLMWDQPDYPALLAQIPDPPPLLFVAGDPRILEKPQLAMVGSRRASRPGMDTAAAFSRSLAGAGFVITSGLAL
GIDAAAHQAAVDVGGQTVGVLGTGLENFYPQRNRRLADAMIASGSAVLSEFPLDVGPTPSNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGWQHLPVSTAAANPDNPLLRLL
HAAPHTSEGLADSSGWALPKVLAALTELEMDGRAVCENGRWFARVS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=773398 QR290_RS01120 WP_289204140.1 250000..251100(+) (dprA) [Pseudomonas fluorescens strain PH.SM]
ATGATGATGCCTGACTCTTCGCCGGTTTCCCCGGCGGAAATGGAAGCGCGCCTGCGCCTGCACCGCTTGCCGGAGATCGG
TCCCAAGCGTTTCACCAAACTGCTCGAAGCCTTCGGCTCGGCCTCGAAGGCGATCAGCGCACCCGCCAGCGCCTGGCGCT
CGCTGGGTTTGCCGGCGACTTGCGCCGAGGCCCGACGCTGCCCTGAAGTTCGCGACGGCGCCAGCCATGCATTGCGCTGG
CTAGAGCGTCCGAATCAACATTTGCTGATGTGGGATCAGCCGGATTACCCGGCCTTGCTGGCGCAGATTCCCGACCCGCC
GCCCTTGCTGTTCGTCGCTGGCGACCCACGGATTCTGGAAAAACCGCAACTGGCGATGGTCGGCAGTCGCCGTGCCTCCC
GCCCCGGCATGGACACTGCCGCTGCGTTTTCCCGCAGCCTCGCGGGGGCCGGATTTGTCATCACCAGCGGACTGGCGCTG
GGCATTGATGCGGCGGCGCATCAAGCCGCTGTCGACGTCGGCGGGCAAACGGTCGGTGTGCTCGGTACTGGTCTGGAAAA
CTTTTATCCACAGCGCAACCGGCGGTTGGCGGACGCGATGATTGCGTCCGGCAGTGCAGTGCTTTCGGAATTCCCTCTGG
ACGTCGGGCCAACGCCGAGCAACTTCCCCAGGCGCAACCGGATCATCAGCGGTTTGTCCCTCGGTGTGCTGGTGGTCGAG
GCCAGTGTCGCCAGTGGTTCGTTGATCACCGCGCGGCTGGCCGCGGAACAGGGGCGTGAGGTGTACGCCATTCCGGGTTC
GATCCACCACCCCGGCGCCCGGGGCTGTCATCAACTGATCCGTGATGGGGCGGTGCTGGTGGAAACCATCGAGCACATTC
TCGAAGCCTTGCGCGGTTGGCAGCATCTACCGGTATCCACCGCCGCCGCGAATCCGGATAACCCGTTGCTGCGTCTGCTG
CACGCCGCGCCGCACACCAGCGAGGGCCTGGCGGACAGCAGTGGCTGGGCGCTGCCCAAAGTGCTGGCGGCGTTGACCGA
ACTGGAGATGGATGGCCGTGCGGTGTGCGAAAACGGCCGCTGGTTTGCGCGTGTGAGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(309-359)

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

40.921

100

0.413
  dprA Legionella pneumophila strain ERS1305867

41.573

97.268

0.404
  dprA Acinetobacter baylyi ADP1

40.282

96.995

0.391
  dprA Neisseria meningitidis MC58

44.872

85.246

0.383
  dprA Neisseria meningitidis strain C311

44.872

85.246

0.383
  dprA Neisseria gonorrhoeae strain FA1090

43.849

86.612

0.38
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.045

97.268

0.38
  dprA Neisseria gonorrhoeae MS11

43.533

86.612

0.377
  dprA Acinetobacter baumannii D1279779

38.636

96.175

0.372
  dprA Glaesserella parasuis strain SC1401

42.54

86.066

0.366
  dprA Haemophilus influenzae Rd KW20

46.316

77.869

0.361