Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QR290_RS01115 Genome accession   NZ_CP128260
Coordinates   248895..249920 (+) Length   341 a.a.
NCBI ID   WP_289204139.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243895..254920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS01090 (QR290_01090) - 244162..244476 (-) 315 WP_115079799.1 hypothetical protein -
  QR290_RS01095 (QR290_01095) trkA 244497..245873 (-) 1377 WP_085606334.1 Trk system potassium transporter TrkA -
  QR290_RS01100 (QR290_01100) rsmB 245896..247206 (-) 1311 WP_115079800.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QR290_RS01105 (QR290_01105) fmt 247203..248162 (-) 960 WP_289204138.1 methionyl-tRNA formyltransferase -
  QR290_RS01110 (QR290_01110) def 248219..248725 (-) 507 WP_007954104.1 peptide deformylase -
  QR290_RS01115 (QR290_01115) tsaP 248895..249920 (+) 1026 WP_289204139.1 LysM domain-containing protein Machinery gene
  QR290_RS01120 (QR290_01120) dprA 250000..251100 (+) 1101 WP_289204140.1 DNA-processing protein DprA Machinery gene
  QR290_RS01125 (QR290_01125) - 251155..251712 (+) 558 WP_007954101.1 L-threonylcarbamoyladenylate synthase -
  QR290_RS01130 (QR290_01130) - 251985..252656 (+) 672 WP_289204141.1 hypothetical protein -
  QR290_RS01135 (QR290_01135) - 252634..253368 (+) 735 WP_289204142.1 iron-containing redox enzyme family protein -
  QR290_RS01140 (QR290_01140) - 253411..254505 (+) 1095 WP_115079806.1 DUF3419 family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37507.77 Da        Isoelectric Point: 9.0614

>NTDB_id=773397 QR290_RS01115 WP_289204139.1 248895..249920(+) (tsaP) [Pseudomonas fluorescens strain PH.SM]
MRKSLLALLFLASAGTAHGQVQLKEGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQIENPNLIYPGDTLTLSYV
NGQPRLTVNRGESRGTIKLSPRIRTSPVAEAIPSIPLKSINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGHFDPNQPVYGIFRQGKVYTDPQSKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPTTDINGLIIDVPRGVTQIGAMDVVTLNKGKRDGLTEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=773397 QR290_RS01115 WP_289204139.1 248895..249920(+) (tsaP) [Pseudomonas fluorescens strain PH.SM]
ATGAGGAAATCACTACTCGCCCTGCTGTTTCTGGCCTCGGCCGGCACCGCGCACGGGCAAGTGCAACTCAAGGAAGGTTT
TCCACAGCAATACACGGTGGTTTCGGGGGATACGCTCTGGGACATCTCCGGTAAATATTTGCGCGAACCCTGGCAGTGGC
CGCAGCTGTGGCGGGCCAATCCGCAGATCGAAAACCCCAACCTGATCTATCCGGGCGACACGCTGACGCTCAGTTACGTC
AACGGCCAGCCGCGCCTGACCGTCAATCGCGGCGAGTCGCGCGGCACCATCAAGTTGTCGCCGCGTATCCGTACCAGTCC
GGTGGCCGAGGCGATTCCGAGCATTCCACTCAAATCCATCAACAGCTTTCTGCTGAGCAACCGCATCGTCGACAAGGTCG
AGGACTTCGACAAGGCGCCGTACATCGTCGCCGGCGATGCCGAACGGGTGCTCAGCGGCACCGGCGACCGGATCTTCGCT
CGTGGTCATTTCGACCCGAACCAGCCGGTCTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGATCCGCAGAGCAAGGA
GTTTCTGGGGATCAATGCCGACGACATCGGCGGTGGTGAAATCGTCGCCACTGAAGGCGACGTCGCCACCCTCGCCCTGC
AACGCACGACCCAGGAAGTGCGCCTCGGCGACCGCTTGTTCAGTGGCGAAGAGCGTTCGATCAACTCGACCTTCATGCCC
AGCGCTCCCACTACCGACATCAACGGCCTGATCATCGATGTGCCCCGAGGCGTCACGCAGATCGGCGCGATGGACGTGGT
AACGCTGAACAAGGGCAAACGCGACGGTCTGACCGAAGGCAACGTGCTGGTGGTGATGAAAACCGGGGAAACCGTACGTG
ACCGGATCACCGGTCAGCCGCTGAAAATCCCCGATGAACGCGCCGGATTGCTGATGGTGTTCCGCACCTACGACAAACTC
AGTTACGGCCTCGTGCTGAACGCATCGCGCTCGCTCGCGGTGCTGGACAAGGTGCGAAATCCTTAG

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

33.88

100

0.364