Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PF515_RS09960 Genome accession   NZ_CP115626
Coordinates   2096046..2096426 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00185     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2091046..2101426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF515_RS09930 (PF515_09930) kdsB 2091949..2092710 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF515_RS09935 (PF515_09935) - 2092722..2093702 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  PF515_RS09940 (PF515_09940) - 2093714..2094055 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  PF515_RS09945 (PF515_09945) - 2094073..2094846 (+) 774 WP_000497298.1 TatD family hydrolase -
  PF515_RS09950 (PF515_09950) - 2094884..2095492 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  PF515_RS09955 (PF515_09955) - 2095502..2096056 (+) 555 WP_000841373.1 type II secretion system protein -
  PF515_RS09960 (PF515_09960) xcpV 2096046..2096426 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  PF515_RS09965 (PF515_09965) xcpW 2096426..2097127 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PF515_RS09970 (PF515_09970) gspK 2097127..2098086 (+) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  PF515_RS09975 (PF515_09975) - 2098317..2098913 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  PF515_RS09980 (PF515_09980) ung 2098964..2099677 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  PF515_RS09985 (PF515_09985) - 2099674..2100798 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  PF515_RS09990 (PF515_09990) tadA 2100805..2101308 (+) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=772888 PF515_RS09960 WP_000836911.1 2096046..2096426(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00185]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=772888 PF515_RS09960 WP_000836911.1 2096046..2096426(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00185]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1