Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PDI73_RS09005 Genome accession   NZ_CP115479
Coordinates   1851220..1851489 (-) Length   89 a.a.
NCBI ID   WP_021721869.1    Uniprot ID   A0A552Z108
Organism   Lactococcus lactis strain EP2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846220..1856489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS08965 (PDI73_08965) - 1846756..1847565 (-) 810 WP_033900712.1 metal ABC transporter permease -
  PDI73_RS08970 (PDI73_08970) - 1847558..1848295 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  PDI73_RS08975 (PDI73_08975) - 1848472..1849314 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  PDI73_RS08980 (PDI73_08980) - 1849311..1849748 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  PDI73_RS08985 (PDI73_08985) comGG 1849829..1850113 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  PDI73_RS08990 (PDI73_08990) comGF 1850152..1850577 (-) 426 WP_161935022.1 competence type IV pilus minor pilin ComGF Machinery gene
  PDI73_RS08995 (PDI73_08995) comGE 1850561..1850857 (-) 297 WP_033900709.1 competence type IV pilus minor pilin ComGE Machinery gene
  PDI73_RS09000 (PDI73_09000) comGD 1850829..1851245 (-) 417 WP_032941843.1 competence type IV pilus minor pilin ComGD Machinery gene
  PDI73_RS09005 (PDI73_09005) comGC 1851220..1851489 (-) 270 WP_021721869.1 competence type IV pilus major pilin ComGC Machinery gene
  PDI73_RS09010 (PDI73_09010) comGB 1851617..1852636 (-) 1020 WP_047206974.1 competence type IV pilus assembly protein ComGB Machinery gene
  PDI73_RS09015 (PDI73_09015) comGA 1852584..1853522 (-) 939 WP_033900707.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10127.55 Da        Isoelectric Point: 4.2950

>NTDB_id=772496 PDI73_RS09005 WP_021721869.1 1851220..1851489(-) (comGC) [Lactococcus lactis strain EP2]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPTLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=772496 PDI73_RS09005 WP_021721869.1 1851220..1851489(-) (comGC) [Lactococcus lactis strain EP2]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTGAAAGTAGTAGAAAGTCAAGCCCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A552Z108

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

88

84.27

0.742
  comYC Streptococcus gordonii str. Challis substr. CH1

58.824

95.506

0.562
  comGC/cglC Streptococcus pneumoniae Rx1

53.933

100

0.539
  comGC/cglC Streptococcus pneumoniae D39

53.933

100

0.539
  comGC/cglC Streptococcus pneumoniae R6

53.933

100

0.539
  comGC/cglC Streptococcus pneumoniae TIGR4

53.933

100

0.539
  comYC Streptococcus suis isolate S10

60.274

82.022

0.494
  comGC/cglC Streptococcus mitis SK321

53.947

85.393

0.461
  comYC Streptococcus mutans UA140

53.425

82.022

0.438
  comYC Streptococcus mutans UA159

53.425

82.022

0.438
  comGC/cglC Streptococcus mitis NCTC 12261

56.25

71.91

0.404