Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QQX47_RS00105 Genome accession   NZ_CP127122
Coordinates   22391..23479 (+) Length   362 a.a.
NCBI ID   WP_003458411.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17391..28479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS00085 (QQX47_00085) rsmB 18286..19590 (-) 1305 WP_003118477.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QQX47_RS00090 (QQX47_00090) fmt 19587..20531 (-) 945 WP_023089593.1 methionyl-tRNA formyltransferase -
  QQX47_RS00095 (QQX47_00095) def 20586..21092 (-) 507 WP_003107059.1 peptide deformylase -
  QQX47_RS00100 (QQX47_00100) tsaP 21231..22256 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QQX47_RS00105 (QQX47_00105) dprA 22391..23479 (+) 1089 WP_003458411.1 DNA-processing protein DprA Machinery gene
  QQX47_RS00110 (QQX47_00110) - 23520..24077 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  QQX47_RS00115 (QQX47_00115) - 24087..25064 (-) 978 WP_034020693.1 NADPH:quinone reductase -
  QQX47_RS00120 (QQX47_00120) hemF 25255..26172 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QQX47_RS00125 (QQX47_00125) aroE 26230..27054 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  QQX47_RS00130 (QQX47_00130) - 27165..28151 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37689.17 Da        Isoelectric Point: 7.0741

>NTDB_id=770733 QQX47_RS00105 WP_003458411.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain Ned_5_BIM]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGRDVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=770733 QQX47_RS00105 WP_003458411.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGATGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.662

98.066

0.428
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.673

99.724

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367
  dprA Glaesserella parasuis strain SC1401

46.503

79.006

0.367