Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZ430_RS16200 Genome accession   NZ_CP115039
Coordinates   3454824..3456041 (-) Length   405 a.a.
NCBI ID   WP_003302807.1    Uniprot ID   A0A9X1SMZ2
Organism   Stutzerimonas kunmingensis strain LP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3449824..3461041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ430_RS16165 (OZ430_16170) rpsI 3449960..3450352 (-) 393 WP_044315479.1 30S ribosomal protein S9 -
  OZ430_RS16170 (OZ430_16175) rplM 3450367..3450795 (-) 429 WP_044315480.1 50S ribosomal protein L13 -
  OZ430_RS16175 (OZ430_16180) - 3451227..3452264 (+) 1038 WP_044315481.1 NADP(H)-dependent aldo-keto reductase -
  OZ430_RS16180 (OZ430_16185) - 3452327..3453007 (+) 681 WP_044315482.1 energy-coupling factor ABC transporter permease -
  OZ430_RS16185 (OZ430_16190) yacG 3453018..3453215 (-) 198 WP_014821358.1 DNA gyrase inhibitor YacG -
  OZ430_RS16190 (OZ430_16195) coaE 3453212..3453820 (-) 609 WP_375664777.1 dephospho-CoA kinase -
  OZ430_RS16195 (OZ430_16200) pilD 3453952..3454821 (-) 870 WP_312915418.1 A24 family peptidase Machinery gene
  OZ430_RS16200 (OZ430_16205) pilC 3454824..3456041 (-) 1218 WP_003302807.1 type II secretion system F family protein Machinery gene
  OZ430_RS16205 (OZ430_16210) pilB 3456043..3457746 (-) 1704 WP_312915417.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ430_RS16210 (OZ430_16215) - 3458069..3458563 (+) 495 WP_312915414.1 pilin -
  OZ430_RS16215 (OZ430_16225) - 3459624..3460064 (+) 441 WP_312244535.1 YtoQ family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43964.75 Da        Isoelectric Point: 9.9279

>NTDB_id=768012 OZ430_RS16200 WP_003302807.1 3454824..3456041(-) (pilC) [Stutzerimonas kunmingensis strain LP1]
MAQKAIKTSVFTWEGTNKQGAKIKGELNGVSPAMVKAQLRKQGVNPQKVRKKSVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHVVLLVMFGAAYAFK
TAHGKSERFRNGFDRFLLKIPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKADVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=768012 OZ430_RS16200 WP_003302807.1 3454824..3456041(-) (pilC) [Stutzerimonas kunmingensis strain LP1]
ATGGCGCAGAAAGCGATAAAAACCAGTGTGTTCACCTGGGAAGGGACAAACAAGCAGGGCGCGAAGATAAAGGGCGAGCT
CAACGGCGTGAGCCCCGCGATGGTCAAGGCGCAGCTGCGCAAGCAGGGTGTCAATCCCCAAAAGGTGCGCAAGAAGTCGG
TTTCGCTGTTCAGTGCTGGCAAAAAGATCAAGCCGATGGACATCGCCCTGTTCACTCGCCAGATGGCAACCATGATGAAA
GCAGGTGTGCCGCTATTGCAGTCCTTCGACATCATCGGTGAGGGCTTTGACAATCCGAACATGCGCAAGCTGGTGGATGA
TCTGAAACAGGAGGTCGCCGCGGGTAATAGCTTCGCAACGGCGCTGCGCAAGAAGCCTCAATACTTCGATGATCTCTATT
GCAATCTGGTTGACTCGGGCGAGCAGTCCGGTTCGCTAGAAACGCTGCTTGATCGGGTGGCAACCTACAAGGAAAAGACC
GAGGCCCTGAAGGCCAAGATCAAGAAGGCGATGAATTACCCTATTGCCGTCGTATTGGTTGCAATCATTGTTTCGGCGAT
CTTGCTGATCAAGGTGGTTCCGCAGTTTCAGGACGTCTTCGCAAACTTCGGCGCGGAGCTCCCGGCGTTTACATTGATGG
TGATTGGCTTGTCCGAAGCGCTGCAGGCCTGGTGGCACGTGGTGCTGCTCGTCATGTTTGGGGCGGCTTATGCTTTCAAG
ACTGCCCACGGCAAATCGGAACGTTTCCGCAATGGGTTTGACCGTTTTTTGCTCAAGATCCCAGTGGTCGGCGATATTCT
CTATAAGTCTGCGGTGGCGCGCTTTGCGCGCACGCTGGCCACTACCTTTGCCGCCGGTGTGCCGTTGGTCGATGCATTGG
ACTCGGTGGCCGGGGCGACCGGCAATGTGGTGTTCCGCAATGCGACCATGAAGGTCAAGGCTGATGTATCCAGTGGTATG
CAGCTTAACTTTTCGATGCGCACTACCGGCACCTTTCCCAGTATGGCGATCCAGATGACGGCGATTGGCGAGGAGTCCGG
CTCTCTTGATGAGATGCTTGCGAAGGTGGCGACGTTCTATGAAGACGAAGTCGACAATATGGTCGACGGGCTGACTGCTC
TGATGGAGCCAATGATCATGGCGGTGCTTGGTGTGCTGGTCGGCGGTTTGATCATTGCCATGTATCTCCCGATTTTCCAA
CTGGGTGCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baylyi ADP1

59.113

100

0.593
  pilC Acinetobacter baumannii D1279779

58.519

100

0.585
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilG Neisseria meningitidis 44/76-A

44.279

99.259

0.44
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.591

98.519

0.36