Detailed information NTG0768011

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OZ430_RS16195
• Genome accession: NZ_CP115039
• Coordinates: 3453952..3454821 (-)
• Length: 289 a.a.
• NCBI ID: WP_312915418.1
• Uniprot ID: -
• Organism: Stutzerimonas kunmingensis strain LP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3448952..3459821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OZ430_RS16160 (OZ430_16165)	petA	3449110..3449703 (-)	594	WP_014821354.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
OZ430_RS16165 (OZ430_16170)	rpsI	3449960..3450352 (-)	393	WP_044315479.1	30S ribosomal protein S9	-
OZ430_RS16170 (OZ430_16175)	rplM	3450367..3450795 (-)	429	WP_044315480.1	50S ribosomal protein L13	-
OZ430_RS16175 (OZ430_16180)	-	3451227..3452264 (+)	1038	WP_044315481.1	NADP(H)-dependent aldo-keto reductase	-
OZ430_RS16180 (OZ430_16185)	-	3452327..3453007 (+)	681	WP_044315482.1	energy-coupling factor ABC transporter permease	-
OZ430_RS16185 (OZ430_16190)	yacG	3453018..3453215 (-)	198	WP_014821358.1	DNA gyrase inhibitor YacG	-
OZ430_RS16190 (OZ430_16195)	coaE	3453212..3453820 (-)	609	WP_375664777.1	dephospho-CoA kinase	-
OZ430_RS16195 (OZ430_16200)	pilD	3453952..3454821 (-)	870	WP_312915418.1	A24 family peptidase	Machinery gene
OZ430_RS16200 (OZ430_16205)	pilC	3454824..3456041 (-)	1218	WP_003302807.1	type II secretion system F family protein	Machinery gene
OZ430_RS16205 (OZ430_16210)	pilB	3456043..3457746 (-)	1704	WP_312915417.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OZ430_RS16210 (OZ430_16215)	-	3458069..3458563 (+)	495	WP_312915414.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32120.15 Da
• Isoelectric Point: 6.9993

>NTDB_id=768011 OZ430_RS16195 WP_312915418.1 3453952..3454821(-) (pilD) [Stutzerimonas kunmingensis strain LP1]
MMLMDYLASHVLAFVLSAALLGLLVGSFLNVLIYRLPIMMQREWRAQALEYLECPPEPVRERFNLLLPSSRCPHCDHQIR
SWENIPLVSWLALCGKCSSCRAPISSRYPLVELACGLLSGYVAWHFGFTWQAGAMLLLTWGLVAMSMIDIDHQLLPDSLV
LPLLWLGLILNSFGLFVSLESALGGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGTILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLHFARF

Nucleotide

• Length: 870 bp

>NTDB_id=768011 OZ430_RS16195 WP_312915418.1 3453952..3454821(-) (pilD) [Stutzerimonas kunmingensis strain LP1]
ATGATGTTGATGGATTATCTGGCCAGCCACGTGCTGGCCTTTGTTTTGTCCGCTGCTTTGCTAGGTTTGTTGGTCGGCAG
CTTTCTCAATGTCTTGATTTATCGCCTGCCGATCATGATGCAGCGTGAGTGGCGCGCGCAGGCGCTTGAGTATCTCGAGT
GTCCGCCGGAGCCGGTCCGTGAGCGCTTCAATCTGCTGCTGCCAAGCTCGCGGTGCCCGCACTGTGATCATCAGATTCGC
TCTTGGGAGAATATCCCCTTGGTCAGCTGGCTGGCCTTGTGTGGCAAGTGTTCGTCATGCCGGGCGCCGATCAGCAGTCG
CTATCCCCTTGTGGAGTTGGCGTGCGGCCTGCTTTCTGGCTATGTCGCTTGGCATTTCGGTTTCACCTGGCAGGCAGGAG
CAATGCTGTTGCTGACCTGGGGATTGGTAGCGATGAGCATGATCGATATCGATCACCAGTTGCTGCCCGATTCGCTGGTG
CTGCCGTTGTTGTGGCTTGGTCTCATCCTGAACAGCTTCGGTTTGTTCGTATCGCTTGAAAGTGCACTGGGGGGAGCTGT
AGCGGGATATCTGAGCCTGTGGTCGGTTTATTGGCTGTTCAAGCTGGTCACCGGCAAAGAAGGTATGGGCTATGGCGATT
TCAAACTGCTTGCGATGTTAGGAGCTTGGGGTGGCTGGCAGGTGTTACCACTTACAATCCTATTGTCGTCGGTGGTTGGG
GCTGTTCTTGGCACAATCCTGTTGCGGGTGCAGCGCGCCGAGAGCAGCACGCCCATCCCTTTCGGTCCCTACTTGGCGAT
CGCCGGCTGGATCGCGTTGCTTTGGGGTGACCGGATTACCGAGAGCTATCTCCATTTCGCGCGCTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.696	95.502	0.561
pilD	Vibrio campbellii strain DS40M4	55.678	94.464	0.526
pilD	Acinetobacter baumannii D1279779	50.704	98.27	0.498
pilD	Acinetobacter nosocomialis M2	50.704	98.27	0.498
pilD	Neisseria gonorrhoeae MS11	52.471	91.003	0.478