Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   O7776_RS12010 Genome accession   NZ_CP114887
Coordinates   2472252..2473943 (-) Length   563 a.a.
NCBI ID   WP_274307301.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2467252..2478943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS11970 - 2467449..2467574 (-) 126 WP_274307294.1 hypothetical protein -
  O7776_RS11975 - 2467776..2468153 (-) 378 WP_274307295.1 PH domain-containing protein -
  O7776_RS20370 - 2468406..2468531 (-) 126 WP_420802182.1 hypothetical protein -
  O7776_RS11985 - 2468726..2469346 (-) 621 WP_274307296.1 NAD(P)-dependent oxidoreductase -
  O7776_RS11990 - 2469511..2469723 (-) 213 WP_274307297.1 hypothetical protein -
  O7776_RS11995 - 2469744..2469929 (-) 186 WP_274307298.1 hypothetical protein -
  O7776_RS12000 spo0A 2470085..2470873 (-) 789 WP_274307299.1 sporulation transcription factor Spo0A -
  O7776_RS12005 - 2471206..2472129 (-) 924 WP_274307300.1 SpoIVB peptidase S55 domain-containing protein -
  O7776_RS12010 recN 2472252..2473943 (-) 1692 WP_274307301.1 DNA repair protein RecN Machinery gene
  O7776_RS12015 ahrC 2473960..2474409 (-) 450 WP_274307302.1 transcriptional regulator AhrC/ArgR -
  O7776_RS12020 - 2474657..2475475 (-) 819 WP_274307303.1 TlyA family RNA methyltransferase -
  O7776_RS12025 dxs 2475483..2477378 (-) 1896 WP_274307304.1 1-deoxy-D-xylulose-5-phosphate synthase -
  O7776_RS12030 - 2477544..2478428 (-) 885 WP_274307305.1 polyprenyl synthetase family protein -
  O7776_RS12035 xseB 2478432..2478659 (-) 228 WP_274307306.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63995.36 Da        Isoelectric Point: 4.6559

>NTDB_id=767396 O7776_RS12010 WP_274307301.1 2472252..2473943(-) (recN) [Solibacillus daqui strain ZS111008 isolate Daqu]
MLKELSIRNFAIIDDLTVSFSEGLTVLTGETGAGKSIIIDAVHILAGGRGSTEFIRHGEKKAELGGHFEISSEKHPIYLK
LEEHGIEAEEGSIILRRDLNESGKSICRVNGKLVPLSVLREIGGSLIDIHGQHENQELMDEKFHIHLLDHFAYHDLKVIK
ANYDEAYETYRQLKREVAELSINEQRAAQRIDLYQFQIQELEQAALRVDEEESLSEERTRLMNFHKIFERANMAYESISG
EGNGLDFIGNAMNALEDIVRLDSIFKESSEAVTSSFYALQDAAYQVKNALDDLEYDAERLNEVEQRLALYQNMKRKYGTT
VEEILFYYEKIEEELSQLLNRDEAMQKNEQLLAQMEIDLNEFAEQLTTVRKQSALKLSEAIMNELRMLHMEKAQFIVNFE
QLDHFDINGKDYVAFYISTNVGEPPKSLPKVASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHQYYIKKQVEHDRTFTTITEMEQHERIEEISRMMSGAEITDLTLQHASELLQLANERKE
AMK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=767396 O7776_RS12010 WP_274307301.1 2472252..2473943(-) (recN) [Solibacillus daqui strain ZS111008 isolate Daqu]
TTGTTAAAAGAACTTAGCATTCGAAATTTTGCTATTATTGATGATTTGACTGTTAGCTTTTCAGAAGGCTTGACTGTTTT
AACAGGTGAAACAGGTGCAGGTAAATCGATTATTATTGATGCTGTCCATATTTTAGCTGGTGGTCGTGGCTCTACTGAGT
TTATTCGCCACGGTGAAAAAAAAGCAGAATTAGGTGGCCATTTTGAAATTAGCAGTGAGAAGCATCCAATTTATTTGAAA
TTAGAGGAGCATGGCATCGAAGCAGAAGAAGGTTCGATTATTTTACGGCGGGACTTAAATGAATCCGGAAAAAGTATTTG
TCGAGTAAACGGTAAGCTTGTGCCATTATCTGTATTACGCGAAATTGGTGGAAGCTTAATTGATATTCATGGTCAGCATG
AAAACCAAGAATTAATGGATGAAAAATTTCATATTCATTTATTGGATCATTTTGCTTATCATGATTTAAAGGTTATTAAA
GCAAACTATGATGAGGCGTATGAAACGTATCGTCAATTAAAACGAGAAGTAGCAGAATTAAGCATTAATGAGCAACGCGC
TGCGCAACGTATTGATTTATATCAATTCCAAATTCAAGAACTTGAGCAAGCCGCATTACGTGTTGATGAAGAAGAGTCGC
TTTCTGAAGAACGTACTCGTCTAATGAATTTCCATAAAATCTTTGAGCGTGCCAATATGGCTTATGAATCAATTTCAGGT
GAGGGCAACGGGTTAGATTTTATCGGAAACGCTATGAATGCATTAGAAGACATTGTGCGCCTTGATTCGATCTTTAAAGA
ATCTTCAGAGGCTGTAACTTCAAGCTTTTATGCGCTTCAAGATGCAGCTTATCAAGTGAAAAATGCGTTAGACGACTTAG
AATATGATGCCGAGCGTTTAAATGAAGTTGAACAACGTCTGGCACTCTATCAGAATATGAAACGTAAATATGGTACAACG
GTAGAAGAAATTCTCTTTTACTACGAAAAAATAGAAGAAGAGTTAAGTCAATTGTTAAATCGAGATGAAGCGATGCAAAA
AAATGAGCAATTATTAGCGCAGATGGAAATCGATTTAAATGAATTTGCTGAACAATTAACAACAGTTCGTAAACAAAGTG
CACTGAAATTAAGTGAAGCAATTATGAATGAGTTACGGATGTTACATATGGAAAAAGCCCAATTTATCGTTAACTTTGAA
CAACTTGATCATTTTGATATAAACGGTAAAGATTATGTAGCTTTTTATATTTCGACAAACGTCGGAGAGCCACCAAAATC
TTTACCAAAAGTGGCGTCGGGTGGAGAGTTGTCACGTATGATGCTTGCGTTAAAAACGATTTTTTCTTCTTCGAATGGCA
TTACATCAATCATATTCGACGAGGTAGATACTGGTGTAAGTGGTCGCGTAGCACAGGCAATCGCGGAAAAAATTGCTGCA
ATCTCAGTCAATTCCCAAGTTCTATGTATTTCCCATTTACCTCAAGTAGCAGCGATGGCAGATCATCAATACTACATAAA
AAAACAGGTAGAGCATGATCGTACATTTACAACGATTACTGAAATGGAACAACATGAACGTATTGAAGAAATTAGCCGAA
TGATGAGCGGTGCAGAAATAACGGATTTAACGTTACAGCACGCTTCTGAATTATTACAATTGGCAAATGAACGTAAAGAA
GCGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.916

100

0.529