Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O4J62_RS01385 Genome accession   NZ_CP114601
Coordinates   307945..309171 (-) Length   408 a.a.
NCBI ID   WP_179997302.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302945..314171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS01360 (O4J62_01360) - 304236..304559 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  O4J62_RS01365 (O4J62_01365) rlmB 304748..305497 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O4J62_RS01370 (O4J62_01370) - 305592..306470 (+) 879 WP_042068576.1 DMT family transporter -
  O4J62_RS01375 (O4J62_01375) coaE 306476..307075 (-) 600 WP_323712659.1 dephospho-CoA kinase -
  O4J62_RS01380 (O4J62_01380) pilD 307085..307945 (-) 861 WP_004975862.1 prepilin peptidase Machinery gene
  O4J62_RS01385 (O4J62_01385) pilC 307945..309171 (-) 1227 WP_179997302.1 type II secretion system F family protein Machinery gene
  O4J62_RS01390 (O4J62_01390) pilB 309202..310914 (-) 1713 WP_323712660.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4J62_RS01395 (O4J62_01395) tpiA 311192..311983 (+) 792 WP_019836081.1 triose-phosphate isomerase -
  O4J62_RS01400 (O4J62_01400) secG 311997..312326 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -
  O4J62_RS01425 (O4J62_01425) rimP 313278..313802 (+) 525 WP_004975871.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45014.56 Da        Isoelectric Point: 9.9487

>NTDB_id=766791 O4J62_RS01385 WP_179997302.1 307945..309171(-) (pilC) [Acinetobacter towneri strain TT1-3_T]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVMIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=766791 O4J62_RS01385 WP_179997302.1 307945..309171(-) (pilC) [Acinetobacter towneri strain TT1-3_T]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTCACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACATTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ATCTGTTCTGCTCTTTGGTTGAATCTGGTGAACAATCGGGTGCACTAGAAACCATGCTGGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATCGTGGTGGCTGTGATTGT
GACCATTATTTTGATGGTAAAAGTTGTACCTGTATTTGAAGAGTTGTTTAGCTCTTTTGGTGCAGACTTGCCTGCCTTCA
CTAAAATGGTGGTCAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATGATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCCATTATCGCGCGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCTTTGGAATCGACCGCTGGGGCAACCAATAACGTGGTCTATGAAGAAGCGGTGATGAAAATCCGTGATGATGTCGCG
ACAGGACAGCAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCTTCTATGGCGGTGCAAATGGTAGCCATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTAGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCTGTCTTGGGTATTTTAGTGGGTGGTTTAGTTGTCGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417
  pilC Thermus thermophilus HB27

36.79

99.265

0.365