Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O4J62_RS01380 Genome accession   NZ_CP114601
Coordinates   307085..307945 (-) Length   286 a.a.
NCBI ID   WP_004975862.1    Uniprot ID   A0A4R0DGY7
Organism   Acinetobacter towneri strain TT1-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302085..312945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS01360 (O4J62_01360) - 304236..304559 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  O4J62_RS01365 (O4J62_01365) rlmB 304748..305497 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O4J62_RS01370 (O4J62_01370) - 305592..306470 (+) 879 WP_042068576.1 DMT family transporter -
  O4J62_RS01375 (O4J62_01375) coaE 306476..307075 (-) 600 WP_323712659.1 dephospho-CoA kinase -
  O4J62_RS01380 (O4J62_01380) pilD 307085..307945 (-) 861 WP_004975862.1 prepilin peptidase Machinery gene
  O4J62_RS01385 (O4J62_01385) pilC 307945..309171 (-) 1227 WP_179997302.1 type II secretion system F family protein Machinery gene
  O4J62_RS01390 (O4J62_01390) pilB 309202..310914 (-) 1713 WP_323712660.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4J62_RS01395 (O4J62_01395) tpiA 311192..311983 (+) 792 WP_019836081.1 triose-phosphate isomerase -
  O4J62_RS01400 (O4J62_01400) secG 311997..312326 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32041.41 Da        Isoelectric Point: 8.0564

>NTDB_id=766790 O4J62_RS01380 WP_004975862.1 307085..307945(-) (pilD) [Acinetobacter towneri strain TT1-3_T]
MQELIAYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKITLSKPASTCPKCHNP
IRWYQNIPVLSWLVLRGKCSNCQNLISVRYPMIEVLTAVCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=766790 O4J62_RS01380 WP_004975862.1 307085..307945(-) (pilD) [Acinetobacter towneri strain TT1-3_T]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTTTGAATGTGGTGATTTACCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAATGACTGCCAAATGTTATTAC
ATCCTGAACAAGCCATTATTGATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACAACCCA
ATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTAGCAACTGCCAAAACCTGATCAG
CGTACGTTATCCAATGATTGAAGTATTAACCGCTGTTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCCTGCCTTTGGCTGCACTGGGTTTGGCAGTCAACAGCTATGCCATCTATACCTCACCGACATCGGCAATTTGGGG
TTATGTAATTGGCTTCCTATGTCTATGGGTGGTGTATTACCTGTTTAAAATCGTCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTCAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCGATGATGTTACCCCTGATTGTGCTGCTATCGTCCTTA
GTTGGGGCTATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTTGCATTTGGTCCGTATATCGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGCGAGCAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0DGY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.351

99.65

0.801
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

55.224

93.706

0.517
  pilD Vibrio campbellii strain DS40M4

52.788

94.056

0.497
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441