Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   O4J62_RS01085 Genome accession   NZ_CP114601
Coordinates   246587..246913 (+) Length   108 a.a.
NCBI ID   WP_004975751.1    Uniprot ID   A0A2A5PGU4
Organism   Acinetobacter towneri strain TT1-3_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 241587..251913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS01060 (O4J62_01060) hemC 242252..243172 (+) 921 WP_286381159.1 hydroxymethylbilane synthase -
  O4J62_RS01065 (O4J62_01065) - 243194..243973 (+) 780 WP_004975746.1 uroporphyrinogen-III synthase -
  O4J62_RS01070 (O4J62_01070) - 243970..244806 (+) 837 WP_323712648.1 hypothetical protein -
  O4J62_RS01075 (O4J62_01075) - 244807..246000 (+) 1194 WP_178865958.1 heme biosynthesis protein HemY -
  O4J62_RS01080 (O4J62_01080) - 246010..246441 (+) 432 WP_323712649.1 thioesterase family protein -
  O4J62_RS01085 (O4J62_01085) hns 246587..246913 (+) 327 WP_004975751.1 H-NS family nucleoid-associated regulatory protein Regulator
  O4J62_RS01090 (O4J62_01090) gspN 247076..247816 (+) 741 WP_096901906.1 type II secretion system protein N -
  O4J62_RS01095 (O4J62_01095) - 247816..248655 (+) 840 WP_167845711.1 type II secretion system protein N -
  O4J62_RS01100 (O4J62_01100) gspD 248716..250971 (+) 2256 WP_323712650.1 type II secretion system secretin GspD -
  O4J62_RS01105 (O4J62_01105) - 251041..251691 (+) 651 WP_004975761.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12180.06 Da        Isoelectric Point: 9.8659

>NTDB_id=766789 O4J62_RS01085 WP_004975751.1 246587..246913(+) (hns) [Acinetobacter towneri strain TT1-3_T]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=766789 O4J62_RS01085 WP_004975751.1 246587..246913(+) (hns) [Acinetobacter towneri strain TT1-3_T]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PGU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75.926

100

0.759